RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZNF431Q8TF32 576 aaPredicted RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SLC22A17Q8WUG5 538 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 CENPNQ96H22 339 aaPredicted RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SH3YL1Q96HL8 342 aaPredicted RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SCP2D1Q9UJQ7 156 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 NEXMIFQ5QGS0 1516 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 A8MVJ9 347 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 PRKD3O94806 890 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 FARS2O95363 451 aaKnown RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SELPP16109 830 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 UGT8Q16880 541 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 ARSIQ5FYB1 569 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TMEM225Q6GV28 225 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TMEM214Q6NUQ4 689 aaKnown RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 VILLO15195 856 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TNFSF12O43508 249 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 BCHEP06276 602 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 COL6A2P12110 1019 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 ANKRD23Q86SG2 305 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 CNTD1Q8N815 330 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 GIMAP5Q96F15 307 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 CAMK1GQ96NX5 476 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 PKP4Q99569 1192 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 CHRAC1Q9NRG0 131 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TAS2R3Q9NYW6 316 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 CFL2Q9Y281 166 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 PCDHA2Q9Y5H9 948 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 C11orf98E9PRG8 122 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 ERI3O43414 337 aaKnown RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 LDB2O43679 373 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 CD36P16671 472 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SHMT1P34896 483 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TPTEP56180 551 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SEC14L1Q92503 715 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 ATG5Q9H1Y0 275 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 KCNQ5Q9NR82 932 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TLL2Q9Y6L7 1015 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 MARCKSL1P49006 195 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 MR1Q95460 341 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 PLD4Q96BZ4 506 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SHDQ96IW2 340 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 IL20RAQ9UHF4 553 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 PRELID1Q9Y255 219 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 ANKRD33BA6NCL7 494 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TEX44Q53QW1 395 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 ELMOD2Q8IZ81 293 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 FCGR1BQ92637 280 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 SLC25A44Q96H78 314 aaPredicted RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 C7orf34Q96L11 122 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 RANBP3Q9H6Z4 567 aaPredicted RBP11.09□□□□□ -0.63
PTPN4-201ENST00000263708 PCDHGA11Q9Y5H2 935 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
PTPN4-201ENST00000263708 TLR4O00206 839 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 ZNF536O15090 1300 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SMSP52788 366 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 CTBP2P56545 445 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 PLA2R1Q13018 1463 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SGCAQ16586 387 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 LRIF1Q5T3J3 769 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 CDKAL1Q5VV42 579 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 LIX1LQ8IVB5 337 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 PEX13Q92968 403 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 L2HGDHQ9H9P8 463 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SMIM30A4D0T7 59 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 LILRB5O75023 590 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 PRKCGP05129 697 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 NSG1P42857 185 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 GKN2Q86XP6 184 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 MMAAQ8IVH4 418 aaKnown RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SPPL2BQ8TCT7 592 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 CIDECQ96AQ7 238 aaPredicted RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SAT2Q96F10 170 aaPredicted RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 COL21A1Q96P44 957 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 KAT8Q9H7Z6 458 aaKnown RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 TULP4Q9NRJ4 1543 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 A0A1W2PRB8 838 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 B4GALT5O43286 388 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 CSF2P04141 144 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 LIMK2P53671 638 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 DGKZQ13574 1117 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SSX2Q16385 188 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 PGAM4Q8N0Y7 254 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 FANK1Q8TC84 345 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 PAPOLGQ9BWT3 736 aaKnown RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 NANSQ9NR45 359 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 TMEM184CQ9NVA4 438 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 SERTAD3Q9UJW9 196 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 RUVBL1Q9Y265 456 aaKnown RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 CEMIPQ8WUJ3 1361 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 ZNF850A8MQ14 1090 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 IFNA1P01562 189 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 UGT1A1P22309 533 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 RPL10P27635 214 aaKnown RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 GNA12Q03113 381 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 GBE1Q04446 702 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 HACD2Q6Y1H2 254 aa11.08□□□□□ -0.64
PTPN4-201ENST00000263708 HDAC2Q92769 488 aaKnown RBP11.08□□□□□ -0.64
PTPN4-201ENST00000263708 PI15O43692 258 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms