RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 K7ESM1 405 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PDPK1O15530 556 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 BCKDHAP12694 445 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 NDUFV2P19404 249 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 FOXM1Q08050 763 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF763Q0D2J5 394 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PTGR1Q14914 329 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ZNHIT3Q15649 155 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 RFTN2Q52LD8 501 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 OTUD3Q5T2D3 398 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PIP5KL1Q5T9C9 394 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ICE2Q659A1 982 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 OR4F3Q6IEY1 312 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 STK32CQ86UX6 486 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PLD3Q8IV08 490 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PLA2G15Q8NCC3 412 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 MRGPRX1Q96LB2 322 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 KLHL25Q9H0H3 589 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 DDX18Q9NVP1 670 aaKnown RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF282Q9UDV7 671 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SNX5Q9Y5X3 404 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 A0A1W2PRB8 838 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 E2F3O00716 465 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ACSL1P33121 698 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 KRT20P35900 424 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 EEFSECP57772 596 aaKnown RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 CTBSQ01459 385 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 C16orf62Q7Z3J2 963 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ADHFE1Q8IWW8 467 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 LSMEM2Q8N112 164 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 TTC29Q8NA56 475 aaPredicted RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ATG16L2Q8NAA4 619 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 C11orf65Q8NCR3 313 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 FAM156AQ8NDB6 213 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 OR10A6Q8NH74 314 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 HUS1BQ8NHY5 278 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 PIGKQ92643 395 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 HSPA12BQ96MM6 686 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ATP6V1HQ9UI12 483 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 OR6C74A6NCV1 312 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 MTHFD2P13995 350 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 AK4P27144 223 aaPredicted RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 RRM2P31350 389 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 MTPNP58546 118 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 TOR1AIP1Q5JTV8 583 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 SLC2A7Q6PXP3 512 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ZDHHC13Q8IUH4 622 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 VRK3Q8IV63 474 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 PQLC1Q8N2U9 271 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 JPH3Q8WXH2 748 aaPredicted RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 SPATA5L1Q9BVQ7 753 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 FAM120CQ9NX05 1096 aaKnown RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 THEGQ9P2T0 379 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 SIT1Q9Y3P8 196 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 CLDN4O14493 209 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 HNRNPRO43390 633 aaKnown RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 PDE9AO76083 593 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 HOXB6P17509 224 aaKnown RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ATP6V1C1P21283 382 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 TAS2R50P59544 299 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 STX4Q12846 297 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 TMEM259Q4ZIN3 620 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 OGFOD2Q6N063 350 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 OR7G3Q8NG95 312 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 FAM174AQ8TBP5 190 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 SLC39A3Q9BRY0 314 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 C1QTNF2Q9BXJ5 285 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 REXO4Q9GZR2 422 aaKnown RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 TBC1D17Q9HA65 648 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 ANKHQ9HCJ1 492 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 S100A14Q9HCY8 104 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 MBNL1Q9NR56 388 aaKnown RBP11.19□□□□□ -0.62
VPS4A-201ENST00000254950 CLEC1BQ9P126 229 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 GMEB2Q9UKD1 530 aa11.19□□□□□ -0.62
VPS4A-201ENST00000254950 CPED1A4D0V7 1026 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 E7ENX8 843 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 CAPN5O15484 640 aaPredicted RBP11.18□□□□□ -0.62
VPS4A-201ENST00000254950 CD38P28907 300 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 TIA1P31483 386 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS4A-201ENST00000254950 METAP1P53582 386 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 RAB8AP61006 207 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 IHHQ14623 411 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 AGBL4Q5VU57 503 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 LCTLQ6UWM7 567 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 ABHD13Q7L211 337 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 SPPL2CQ8IUH8 684 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 SFRP1Q8N474 314 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 SEMA6AQ9H2E6 1030 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 DLGAP4Q9Y2H0 992 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 CEP350Q5VT06 3117 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 SCELO95171 688 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 STATHP02808 62 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 GBAP04062 536 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 PTDSS1P48651 473 aaKnown RBP11.18□□□□□ -0.62
VPS4A-201ENST00000254950 ACTR3P61158 418 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 HSPB3Q12988 150 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 ZC3H12BQ5HYM0 836 aaKnown RBP11.18□□□□□ -0.62
VPS4A-201ENST00000254950 KIAA1211LQ6NV74 962 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 TMEM26Q6ZUK4 368 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 LILRA3Q8N6C8 439 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms