RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ZNF33BQ06732 778 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 VEZF1Q14119 521 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 PROX2Q3B8N5 592 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 PRSS48Q7RTY5 328 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 IPCEF1Q8WWN9 437 aaPredicted RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 TMEM169Q96HH4 297 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 BRD9Q9H8M2 597 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 TPT1P8Q9HAU6 139 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 B4GALT6Q9UBX8 382 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 TMPRSS11EQ9UL52 423 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 PAIP2BQ9ULR5 123 aaKnown RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 PCDHB11Q9Y5F2 797 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 C9P02748 559 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 GABRR2P28476 465 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 GRK3P35626 688 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 RPP38P78345 283 aaKnown RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 NPRL3Q12980 569 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 PAGE2BQ5JRK9 111 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 FAM43BQ6ZT52 329 aaPredicted RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 HTR3DQ70Z44 454 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 TCEAL8Q8IYN2 117 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 MRPS31Q92665 395 aaKnown RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 VOPP1Q96AW1 172 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 SH3KBP1Q96B97 665 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 HMX1Q9NP08 348 aaPredicted RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 TMEM247A6NEH6 219 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 LAMP1P11279 417 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 EFNA1P20827 205 aaPredicted RBP18.1■□□□□ 0.49
CPSF3-201ENST00000238112 NCS1P62166 190 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 CAMK2GQ13555 558 aaPredicted RBP18.1■□□□□ 0.49
CPSF3-201ENST00000238112 INAQ16352 499 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 FAHD1Q6P587 224 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 AHSA2Q719I0 299 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 GPR155Q7Z3F1 870 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 SYNPOQ8N3V7 929 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 DYNC2LI1Q8TCX1 351 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 DUSP26Q9BV47 211 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 EMILIN2Q9BXX0 1053 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 FBXO8Q9NRD0 319 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 ADPRHL2Q9NX46 363 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 FZD4Q9ULV1 537 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 ERVK-11Q9UQG0 969 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 INHAP05111 366 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 URODP06132 367 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 CD22P20273 847 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 CCL23P55773 120 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 KCNC3Q14003 757 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 TMEM236Q5W0B7 351 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.1■□□□□ 0.491e-12■■■■□ 24.4
CPSF3-201ENST00000238112 DEFB128Q7Z7B8 93 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 THOC6Q86W42 341 aaKnown RBP18.1■□□□□ 0.49
CPSF3-201ENST00000238112 VPS37AQ8NEZ2 397 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 WDR20Q8TBZ3 569 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 AUTS2Q8WXX7 1259 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 PITX2Q99697 317 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 SPATA9Q9BWV2 254 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 EPS8L2Q9H6S3 715 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 RUBCNLQ9H714 662 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 ATAD3AQ9NVI7 634 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 FAM8A1Q9UBU6 413 aa18.1■□□□□ 0.49
CPSF3-201ENST00000238112 SCAMP2O15127 329 aaKnown RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 SUV39H1O43463 412 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 SF1Q15637 639 aaKnown RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 DPY19L3Q6ZPD9 716 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 NEK10Q6ZWH5 1172 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 PLD3Q8IV08 490 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 P3H2Q8IVL5 708 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 HS6ST3Q8IZP7 471 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CPA6Q8N4T0 437 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 MINDY2Q8NBR6 621 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 PHF10Q8WUB8 498 aaKnown RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 ASZ1Q8WWH4 475 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CLP1Q92989 425 aaKnown RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 EPYCQ99645 322 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CPEB1Q9BZB8 566 aaKnown RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 SPATA6Q9NWH7 488 aaPredicted RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 SIRT5Q9NXA8 310 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CORO2BQ9UQ03 480 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 HS3ST2Q9Y278 367 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 KRBA1A5PL33 1030 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 E7EQ34 232 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 POP4O95707 220 aaKnown RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 C21orf58P58505 322 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CREMQ03060 361 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 DOC2AQ14183 400 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CPTPQ5TA50 214 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CCDC71Q8IV32 467 aaPredicted RBP18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CMTM8Q8IZV2 173 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 OR6Q1Q8NGQ2 317 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 CD99L2Q8TCZ2 262 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 UBE2FQ969M7 185 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 MED8Q96G25 268 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 SLC25A13Q9UJS0 675 aa18.09■□□□□ 0.49
CPSF3-201ENST00000238112 PLXNB3Q9ULL4 1909 aa18.08■□□□□ 0.49
CPSF3-201ENST00000238112 ZBBXA8MT70 800 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 YY2O15391 372 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 PCDHGA12O60330 932 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 PQBP1O60828 265 aaKnown RBP18.08■□□□□ 0.48
CPSF3-201ENST00000238112 NUDT7P0C024 238 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 BMP4P12644 408 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms