RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FAM219AQ8IW50 185 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PPM1KQ8N3J5 372 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF383Q8NA42 475 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OR8J2Q8NGG1 315 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 HMGB4Q8WW32 186 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 APOL4Q9BPW4 351 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 UBQLN2Q9UHD9 624 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHA6Q9UN73 950 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GCP02774 474 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TCF4P15884 667 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RAB3AP20336 220 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 HSD11B1P28845 292 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 HSPA7P48741 367 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SSPNQ14714 243 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 IZUMO3Q5VZ72 239 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TAS1R1Q7RTX1 841 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PLPPR4Q7Z2D5 763 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF720Q7Z2F6 126 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MFSD2AQ8NA29 543 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NSUN4Q96CB9 384 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MRPL48Q96GC5 212 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FAM163AQ96GL9 167 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NSL1Q96IY1 281 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TRAF4Q9BUZ4 470 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PCBD2Q9H0N5 130 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LRMDAQ9H2I8 198 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 HIF1ANQ9NWT6 349 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OPN4Q9UHM6 478 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CCDC144AA2RUR9 1427 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FAM83GA6ND36 823 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 COPEO14579 308 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TTC4O95801 387 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 THBS1P07996 1170 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PHKG2P15735 406 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TRAF3Q13114 568 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SNAPC2Q13487 334 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GUK1Q16774 197 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TRAT1Q6PIZ9 186 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 C3orf62Q6ZUJ4 267 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TSPAN14Q8NG11 270 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NSMAFQ92636 917 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PLD4Q96BZ4 506 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CNOT6LQ96LI5 555 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 WFIKKN1Q96NZ8 548 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 AGO3Q9H9G7 860 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 EFCAB1Q9HAE3 211 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PAK6Q9NQU5 681 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MED11Q9P086 117 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NDRG2Q9UN36 371 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FRMPD4Q14CM0 1322 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 A0A0B4J293 547 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MTMR11A4FU01 709 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 F5H5T6 163 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 K7EPK0 472 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ARHGAP33O14559 1287 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MSH4O15457 936 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CIAO1O76071 339 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CNPP09543 421 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SHMT1P34896 483 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TAS2R41P59536 307 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TLE1Q04724 770 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MTAPQ13126 283 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ODF4Q2M2E3 257 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF470Q6ECI4 717 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SERPINA13PQ6UXR4 307 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FAM71E2Q8N5Q1 922 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DEDD2Q8WXF8 326 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 YIPF5Q969M3 257 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 IFT43Q96FT9 208 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SH3YL1Q96HL8 342 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TRIB1Q96RU8 372 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RUSC1Q9BVN2 902 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SMIM3Q9BZL3 60 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 HOXD1Q9GZZ0 328 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NLGN3Q9NZ94 848 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 CEP162Q5TB80 1403 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 UBA6A0AVT1 1052 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 K7EQM0 130 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RBBP9O75884 186 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ADGRE1Q14246 886 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DLG2Q15700 870 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZBTB49Q6ZSB9 765 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 REM2Q8IYK8 340 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LRTOMTQ8WZ04 291 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GJD4Q96KN9 370 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF607Q96SK3 696 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MRI1Q9BV20 369 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 BRIP1Q9BX63 1249 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FBXO8Q9NRD0 319 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ACSS1Q9NUB1 689 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 HSFX1Q9UBD0 423 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TOX4O94842 621 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 VAPBO95292 243 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ICAM2P13598 275 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RHOQP17081 205 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ECHS1P30084 290 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GPR4P46093 362 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NRIP1P48552 1158 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PTTG1IPP53801 180 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms