RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CPTPQ5TA50 214 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 HMBOX1Q6NT76 420 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 LANCL3Q6ZV70 420 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 RANBP3LQ86VV4 465 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NUDT13Q86X67 352 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 GPALPP1Q8IXQ4 340 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NATD1Q8N6N6 113 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FBXO36Q8NEA4 188 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TRPV1Q8NER1 839 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ELOA3Q8NG57 546 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 OR9A1PQ8NGU1 263 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PHOSPHO1Q8TCT1 267 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC6A18Q96N87 628 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TRPM7Q96QT4 1865 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MRPL39Q9NYK5 338 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FZD4Q9ULV1 537 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 POFUT2Q9Y2G5 429 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 VWA7Q9Y334 891 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ARGFXA6NJG6 315 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 A6NLC8 198 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 GPR89AB7ZAQ6 455 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 AP2A2O94973 939 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SOX30O94993 753 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FAM228BP0C875 321 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 GPR89BP0CG08 455 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 STK19P49842 368 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 VASPP50552 380 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 KCNC4Q03721 635 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NFATC3Q12968 1075 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CLCA4Q14CN2 919 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CHRNA6Q15825 494 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CDKAL1Q5VV42 579 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CDCA2Q69YH5 1023 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PRMT9Q6P2P2 845 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 AAGABQ6PD74 315 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 OAFQ86UD1 273 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC26A11Q86WA9 606 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 P2RY11Q96G91 374 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CD180Q99467 661 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 AIFM2Q9BRQ8 373 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ASPNQ9BXN1 380 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SHCBP1LQ9BZQ2 653 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ASB6Q9NWX5 421 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLCO3A1Q9UIG8 710 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 C3orf18Q9UK00 162 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 GSTK1Q9Y2Q3 226 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NADKO95544 446 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ENO1P06733 434 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 C1SP09871 688 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PCMT1P22061 227 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 RPS15AP62244 130 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 INO80DQ53TQ3 878 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ARMC4Q5T2S8 1044 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MZT2AQ6P582 158 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FUKQ8N0W3 1084 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC4A11Q8NBS3 891 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 DENND6BQ8NEG7 585 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SGCDQ92629 289 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CMTM7Q96FZ5 175 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TRMT2BQ96GJ1 504 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SMAD5Q99717 465 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TRIM2Q9C040 744 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CDH20Q9HBT6 801 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NOD2Q9HC29 1040 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 C8orf4Q9NR00 106 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ETNK2Q9NVF9 386 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MCUBQ9NWR8 336 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF282Q9UDV7 671 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SPATA2Q9UM82 520 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MAU2Q9Y6X3 613 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 BTNL10A8MVZ5 291 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 RGS10O43665 173 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PCDHGA12O60330 932 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ZFAND5O76080 213 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PRG2P13727 222 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PRKCHP24723 683 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MPSTP25325 297 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 STOMP27105 288 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 OLR1P78380 273 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PKP1Q13835 747 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF846Q147U1 533 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 OPN5Q6U736 354 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 GPR180Q86V85 440 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC22A16Q86VW1 577 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 EPHX4Q8IUS5 362 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SMG8Q8ND04 991 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NARS2Q96I59 477 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC38A2Q96QD8 506 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 RHOBTB2Q9BYZ6 727 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ANKZF1Q9H8Y5 726 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CCNB1IP1Q9NPC3 277 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SACM1LQ9NTJ5 587 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 STOX2Q9P2F5 926 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SEC14L3Q9UDX4 400 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FAM237AA0A1B0GTK4 181 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 hCG_1807616A0A1W2PRN6 198 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NR5A2O00482 541 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 KPNA4O00629 521 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SEC14L5O43304 696 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MT-CO3P00414 261 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms