RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SH3BGRLO75368 114 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 CIB2O75838 187 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 WNT1P04628 370 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 CELA2BP08218 269 aaPredicted RBP16.24■□□□□ 0.19
CLN3-252ENST00000636907 MAOBP27338 520 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 NDUFS1P28331 727 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 SLC19A1P41440 591 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 MTTPP55157 894 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 PSME3P61289 254 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 KPNB1Q14974 876 aaKnown RBP16.24■□□□□ 0.19
CLN3-252ENST00000636907 COQ5Q5HYK3 327 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 NET1Q7Z628 596 aaPredicted RBP16.24■□□□□ 0.19
CLN3-252ENST00000636907 FBXW8Q8N3Y1 598 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 PCYOX1LQ8NBM8 494 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 CLHC1Q8NHS4 586 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 CDRT15Q96T59 188 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 GSDMCQ9BYG8 508 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 PRM3Q9NNZ6 103 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 PCDHGA7Q9Y5G6 932 aa16.24■□□□□ 0.19
CLN3-252ENST00000636907 FANCMQ8IYD8 2048 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 KDM1AO60341 852 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 EEDO75530 441 aaKnown RBP16.23■□□□□ 0.19
CLN3-252ENST00000636907 PRPS2P11908 318 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 MAPK1P28482 360 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 CCR8P51685 355 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 TLR1Q15399 786 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 TIGD2Q4W5G0 525 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 C10orf62Q5T681 223 aaPredicted RBP16.23■□□□□ 0.19
CLN3-252ENST00000636907 ICE2Q659A1 982 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 NOXRED1Q6NXP6 359 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 C8orf82Q6P1X6 216 aaPredicted RBP16.23■□□□□ 0.19
CLN3-252ENST00000636907 TMIGD1Q6UXZ0 262 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 PARGQ86W56 976 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 HPS6Q86YV9 775 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 KRT78Q8N1N4 520 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 KRTCAP2Q8N6L1 136 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 ABHD11Q8NFV4 315 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 UBE2E3Q969T4 207 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 ROPN1LQ96C74 230 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 CXorf40BQ96DE9 158 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 SPACA7Q96KW9 195 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 DPY30Q9C005 99 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 DMRT3Q9NQL9 472 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 TAAR2Q9P1P5 351 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 CROTQ9UKG9 612 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 COL6A3P12111 3177 aa16.23■□□□□ 0.19
CLN3-252ENST00000636907 PLXND1Q9Y4D7 1925 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PCM1Q15154 2024 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 A0A1W2PR77 199 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 H7BY64 318 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 FOXE1O00358 373 aaPredicted RBP16.22■□□□□ 0.19
CLN3-252ENST00000636907 MAP3K13O43283 966 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PRICKLE3O43900 615 aaPredicted RBP16.22■□□□□ 0.19
CLN3-252ENST00000636907 ENTPD5O75356 428 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 ACPPP15309 386 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 SDC1P18827 310 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 BCKDHBP21953 392 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 TACR1P25103 407 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 CD38P28907 300 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PEBP1P30086 187 aaKnown RBP16.22■□□□□ 0.19
CLN3-252ENST00000636907 ZXDAP98168 799 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PRDX1Q06830 199 aaKnown RBP16.22■□□□□ 0.19
CLN3-252ENST00000636907 DMWDQ09019 674 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PIGGQ5H8A4 983 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PAGE3Q5JUK9 113 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 VN1R5Q7Z5H4 357 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 DCP2Q8IU60 420 aaKnown RBP16.22■□□□□ 0.19
CLN3-252ENST00000636907 MFSD2AQ8NA29 543 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 OR2A1Q8NGT9 310 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 HSPA12BQ96MM6 686 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PRAP1Q96NZ9 151 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 ZBTB18Q99592 522 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 SLC39A3Q9BRY0 314 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 EBPLQ9BY08 206 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 RASSF4Q9H2L5 321 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 TSC22D4Q9Y3Q8 395 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PCDHB11Q9Y5F2 797 aa16.22■□□□□ 0.19
CLN3-252ENST00000636907 PDGFBP01127 241 aaPredicted RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 CTSEP14091 401 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 PIK3CBP42338 1070 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 BLKP51451 505 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 DGKQP52824 942 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 CLDN8P56748 225 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 REEP5Q00765 189 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 RBBP5Q15291 538 aaKnown RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 SF1Q15637 639 aaKnown RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 C1orf146Q5VVC0 180 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 CWF19L1Q69YN2 538 aaKnown RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 IYDQ6PHW0 289 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 RIPOR1Q6ZS17 1223 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 TAF8Q7Z7C8 310 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 OR4K1Q8NGD4 311 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 LCN9Q8WX39 176 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 PATE1Q8WXA2 126 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 CCDC124Q96CT7 223 aaKnown RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 C11orf24Q96F05 449 aaPredicted RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 METTL2AQ96IZ6 378 aaKnown RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 TSSK3Q96PN8 268 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 SERPINI1Q99574 410 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 AIF1LQ9BQI0 150 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms