RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 YIPF2Q9BWQ6 316 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 TGIF2Q9GZN2 237 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 EPS8L2Q9H6S3 715 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ZNF160Q9HCG1 818 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 XAB2Q9HCS7 855 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 FBXO6Q9NRD1 293 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 AGPAT4Q9NRZ5 378 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 UTP6Q9NYH9 597 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 TRPC4Q9UBN4 977 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 FBXO5Q9UKT4 447 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 NOVA2Q9UNW9 492 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 RUVBL1Q9Y265 456 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 SLC5A6Q9Y289 635 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 JRKLQ9Y4A0 524 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 NAV2Q8IVL1 2488 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 USP9YO00507 2555 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 USP9XQ93008 2570 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 NSG1A0A0A6YYJ2 146 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 IDSB3KWA1 339 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 H7BY64 318 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 SMAPO00193 183 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 TXNDC9O14530 226 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 MAP2K7O14733 419 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 FFAR3O14843 346 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 GPR42O15529 346 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 PRPF4O43172 522 aaKnown RBP eCLIP7.24□□□□□ -1.25
CUX1-219ENST00000606749 CCNDBP1O95273 360 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 CLDN1O95832 211 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 SYF2O95926 243 aaKnown RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 PRR35P0CG20 571 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 ENO3P13929 434 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 COL8A1P27658 744 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 SLC1A2P43004 574 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 TSFMP43897 325 aaKnown RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 ABATP80404 500 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 TIAL1Q01085 375 aaKnown RBP eCLIP7.24□□□□□ -1.25
CUX1-219ENST00000606749 CDC16Q13042 620 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 MFAP5Q13361 173 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 DSG2Q14126 1118 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 FAM53BQ14153 422 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 ZNF169Q14929 603 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 TLR1Q15399 786 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 LONRF1Q17RB8 773 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 TTLL9Q3SXZ7 439 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 GARNL3Q5VVW2 1013 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 B3GNTL1Q67FW5 361 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 FAAH2Q6GMR7 532 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 CCDC137Q6PK04 289 aaKnown RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 LINC00696Q6ZRV3 163 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 LMNTD2Q8IXW0 634 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 KBTBD2Q8IY47 623 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 NAT8LQ8N9F0 302 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 CD200R1Q8TD46 325 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 CALML6Q8TD86 181 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 GRHL3Q8TE85 626 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 FAR1Q8WVX9 515 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 PSMF1Q92530 271 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 RERGQ96A58 199 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 MMABQ96EY8 250 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 CNDP1Q96KN2 507 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 C5orf34Q96MH7 638 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 PRAP1Q96NZ9 151 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 GPR21Q99679 349 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 EBNA1BP2Q99848 306 aaKnown RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 DRC3Q9H069 523 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 CCDC68Q9H2F9 335 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 MKKSQ9NPJ1 570 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 C20orf96Q9NUD7 363 aaPredicted RBP7.24□□□□□ -1.25
CUX1-219ENST00000606749 ABCF3Q9NUQ8 709 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 PCYOX1Q9UHG3 505 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 MAD1L1Q9Y6D9 718 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 COMMD10Q9Y6G5 202 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 MAST4O15021 2626 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 LRRK2Q5S007 2527 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 NUP210LQ5VU65 1888 aa7.24□□□□□ -1.25
CUX1-219ENST00000606749 RP1L1Q8IWN7 2480 aaPredicted RBP7.23□□□□□ -1.25
CUX1-219ENST00000606749 HEATR5BQ9P2D3 2071 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 KCNE1BA0A087WTH5 132 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 LOC102723996A0A087X1L8 192 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 IGHV1-45A0A0A0MS14 117 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 A0A0A6YYC8 382 aaPredicted RBP7.23□□□□□ -1.25
CUX1-219ENST00000606749 A0A1W2PQ72 361 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 I3L1I5 382 aaPredicted RBP7.23□□□□□ -1.25
CUX1-219ENST00000606749 PCDH17O14917 1159 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 HAT1O14929 419 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 P2RX6O15547 441 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 BMP10O95393 424 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 HEXBP07686 556 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 ANXA5P08758 320 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 COX6A1P12074 109 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 HRH2P25021 359 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 CXCR2P25025 360 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 IMPA1P29218 277 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 SNRPNP63162 240 aaKnown RBP7.23□□□□□ -1.25
CUX1-219ENST00000606749 MPP1Q00013 466 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 NDUFA9Q16795 377 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 SYT16Q17RD7 645 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 HSP90AA5PQ58FG0 334 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 THEMIS2Q5TEJ8 643 aa7.23□□□□□ -1.25
CUX1-219ENST00000606749 RPUSD3Q6P087 351 aaKnown RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms