RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PCDHGA6Q9Y5G7 932 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PCDHGA4Q9Y5G9 962 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 MRPS18BQ9Y676 258 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PCSK5Q92824 1860 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 TRIM49D1C9J1S8 452 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 H0YGG7 62 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 MEN1O00255 615 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 MAP3K7O43318 606 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 PRAMEF4O60810 478 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 KLHL2O95198 593 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 MT-ND3P03897 115 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 ANXA5P08758 320 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 EZRP15311 586 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 GDF5P43026 501 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 HNMTP50135 292 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 ATP1A2P50993 1020 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 TMPRSS3P57727 454 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 ARF3P61204 181 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 NAA25Q14CX7 972 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 ERCC6LQ2NKX8 1250 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 PRAMEF9Q5VWM5 478 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 TLDC1Q6P9B6 456 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 TIFABQ6ZNK6 161 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 RAPH1Q70E73 1250 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 VN1R4Q7Z5H5 301 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 CCDC91Q7Z6B0 441 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 TBC1D1Q86TI0 1168 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 GPSM1Q86YR5 675 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 IL22RA1Q8N6P7 574 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 NEIL2Q969S2 332 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 C10orf90Q96M02 699 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 SELENOSQ9BQE4 189 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 SARGQ9BW04 601 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 TMEM184CQ9NVA4 438 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 ZNF358Q9NW07 568 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 PADI1Q9ULC6 663 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 SNX7Q9UNH6 387 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 SLC22A14Q9Y267 594 aa18.65■□□□□ 0.58
SHKBP1-221ENST00000599833 P2RX6O15547 441 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 SRPX2O60687 465 aaPredicted RBP18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 KERAO60938 352 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 ONECUT2O95948 504 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 CDH1P12830 882 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 EPORP19235 508 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 CNTFP26441 200 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 TYK2P29597 1187 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 UCNP55089 124 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 VSX2P58304 361 aaPredicted RBP18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 VAC14Q08AM6 782 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 FBXO48Q5FWF7 155 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 CATSPEREQ5SY80 951 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 THEMIS2Q5TEJ8 643 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 THOC6Q86W42 341 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 TMEM151BQ8IW70 566 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 RHEBL1Q8TAI7 183 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 SLC45A3Q96JT2 553 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 HAUS8Q9BT25 410 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 CHST8Q9H2A9 424 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 NMRAL1Q9HBL8 299 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 DHCR7Q9UBM7 475 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 AP1M2Q9Y6Q5 423 aa18.64■□□□□ 0.57
SHKBP1-221ENST00000599833 FAM208BQ5VWN6 2430 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 KCNE1BA0A087WTH5 132 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 NCF1BA6NI72 391 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 NCF1CA8MVU1 366 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 LCMT2O60294 686 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 KRT38O76015 456 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 SBK3P0C264 359 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 NCF1P14598 390 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 HRH2P25021 359 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 HSD17B3P37058 310 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 NFKB2Q00653 900 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 NAA30Q147X3 362 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 TECRLQ5HYJ1 363 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 TCTE1Q5JU00 501 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 WASHC2DQ5SRD0 308 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 BROXQ5VW32 411 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 CCDC81Q6ZN84 652 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 SH2D5Q6ZV89 423 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 FRA10AC1Q70Z53 315 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 C17orf64Q86WR6 236 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 GPR135Q8IZ08 494 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 TMEM151AQ8N4L1 468 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 STAG3L4Q8TBR4 150 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 ESAMQ96AP7 390 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 ALKBH8Q96BT7 664 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 TM4SF19Q96DZ7 209 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 RAB21Q9UL25 225 aa18.63■□□□□ 0.57
SHKBP1-221ENST00000599833 PIEZO2Q9H5I5 2752 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 UBXN8O00124 270 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 KLK8O60259 260 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 CNOT3O75175 753 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 SNRPAP09012 282 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 DLSTP36957 453 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 BCL6P41182 706 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 CXADRP78310 365 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 DNASE1L3Q13609 305 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 ACAP2Q15057 778 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 HKDC1Q2TB90 917 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 ARHGAP40Q5TG30 622 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms