RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 DRC3Q9H069 523 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 KCNK13Q9HB14 408 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 KCNJ16Q9NPI9 418 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 ANKRD10Q9NXR5 420 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 RUVBL1Q9Y265 456 aaKnown RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 ASB1Q9Y576 335 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 INTS1Q8N201 2190 aaKnown RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 A0A0A6YYC8 382 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 MACROD2A1Z1Q3 448 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 NKX2-6A6NCS4 301 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 MROH6A6NGR9 719 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 OR51F1A6NGY5 319 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 FAM90A27PA6NNH2 459 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 GABRR3A8MPY1 467 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 I3L1I5 382 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 TXNDC9O14530 226 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 ZNHIT1O43257 154 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 ZNF189O75820 626 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 SP1P08047 785 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 HOXD4P09016 255 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 TPH1P17752 444 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CTNNA2P26232 953 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CMPK1P30085 196 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CCNFP41002 786 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 EFNA3P52797 238 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 UBASH3AP57075 661 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 TPM4P67936 248 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 OC90Q02509 493 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 FASTKQ14296 549 aaKnown RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 EXT1Q16394 746 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 SYT16Q17RD7 645 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 HKDC1Q2TB90 917 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 TMEM211Q6ICI0 200 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 SLC25A25Q6KCM7 469 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 FBXO42Q6P3S6 717 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 AFTPHQ6ULP2 937 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 FGD2Q7Z6J4 655 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CD163Q86VB7 1156 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CRLF3Q8IUI8 442 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 LGI4Q8N135 537 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 SLC5A8Q8N695 610 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 AMER2Q8N7J2 671 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 LILRB4Q8NHJ6 448 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 FAM57AQ8TBR7 257 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 ACTL9Q8TC94 416 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 RERGQ96A58 199 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 OLFM1Q99784 485 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 DPH7Q9BTV6 452 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CARD6Q9BX69 1037 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 HEMGNQ9BXL5 484 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 VN1R1Q9GZP7 353 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 LRRC40Q9H9A6 602 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 DLL4Q9NR61 685 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 CCM2LQ9NUG4 571 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 SPATA7Q9P0W8 599 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 GNPTGQ9UJJ9 305 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.57□□□□□ -0.88
TRIM28-210ENST00000597618 VPS13CQ709C8 3753 aa9.57□□□□□ -0.88
TRIM28-210ENST00000597618 IGHV3-20A0A0C4DH32 117 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 A0A1W2PPV9 198 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 CCDC162PA2VCL2 907 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 CDK2AP1O14519 115 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 FOXS1O43638 330 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 NME2P1O60361 137 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 SLC25A12O75746 678 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 NEURL1O76050 574 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 TOXO94900 526 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 TPOP07202 933 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 RBP3P10745 1247 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 PKMP14618 531 aaKnown RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 NME2P22392 152 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 AOAHP28039 575 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 PTGS2P35354 604 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 PPARGP37231 505 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 BDKRB1P46663 353 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 AVPR1BP47901 424 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 AGTR2P50052 363 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 TAS2R50P59544 299 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 EIF3EP60228 445 aaKnown RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 MAT1AQ00266 395 aaKnown RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 FOXD4Q12950 439 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 FAM53BQ14153 422 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 TCEAL1Q15170 157 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 MINDY4Q4G0A6 757 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 MFSD4BQ5TF39 518 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 KCTD11Q693B1 232 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 LRRC8BQ6P9F7 803 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 DARS2Q6PI48 645 aaKnown RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 CEP128Q6ZU80 1094 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 LANCL3Q6ZV70 420 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 CLYBLQ8N0X4 340 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 MARVELD2Q8N4S9 558 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 ARHGEF39Q8N4T4 335 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 POGLUT1Q8NBL1 392 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 M1APQ8TC57 530 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 LKAAEAR1Q8TD35 194 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 MAGEC3Q8TD91 643 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 SKA2Q8WVK7 121 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 RND1Q92730 232 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 HDAC10Q969S8 669 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms