RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PDLIM5Q96HC4 596 aaKnown RBP22.81■■□□□ 1.24
SHMT1-206ENST00000579558 VPS39Q96JC1 886 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 CABS1Q96KC9 395 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 PRAP1Q96NZ9 151 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 OR2A5Q96R48 311 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 SYNPO2LQ9H987 977 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 MAU2Q9Y6X3 613 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 MDC1Q14676 2089 aaKnown RBP22.81■■□□□ 1.24
SHMT1-206ENST00000579558 TCRBV9S1A1TA0A576 114 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 CXorf49A8MYA2 514 aaPredicted RBP22.8■■□□□ 1.24
SHMT1-206ENST00000579558 SUV39H1O43463 412 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 ALBP02768 609 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 GSTA2P09210 222 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 CCND1P24385 295 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 HRH2P25021 359 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 SLC7A5Q01650 507 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 ILF2Q12905 390 aaKnown RBP22.8■■□□□ 1.24
SHMT1-206ENST00000579558 ZNF460Q14592 562 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 ZDHHC24Q6UX98 284 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 ATG14Q6ZNE5 492 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 C3orf62Q6ZUJ4 267 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 MED25Q71SY5 747 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 MRGPREQ86SM8 312 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 PLD3Q8IV08 490 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 NKAPQ8N5F7 415 aaKnown RBP22.8■■□□□ 1.24
SHMT1-206ENST00000579558 TMEM102Q8N9M5 508 aaPredicted RBP22.8■■□□□ 1.24
SHMT1-206ENST00000579558 C10orf90Q96M02 699 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 IP6K3Q96PC2 410 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 MCMBPQ9BTE3 642 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 TMEM184CQ9NVA4 438 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 TXNDC16Q9P2K2 825 aa22.8■■□□□ 1.24
SHMT1-206ENST00000579558 RUVBL1Q9Y265 456 aaKnown RBP22.8■■□□□ 1.24
SHMT1-206ENST00000579558 MED13Q9UHV7 2174 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 J3QKU1 62 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 K7EM74 188 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 UMODP07911 640 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 ENO2P09104 434 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-206ENST00000579558 EMP3P54852 163 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 SLC12A2P55011 1212 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 RRADP55042 308 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 GPX6P59796 221 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 HKDC1Q2TB90 917 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 CAPN13Q6MZZ7 669 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-206ENST00000579558 PRMT9Q6P2P2 845 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 C17orf64Q86WR6 236 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 TMEM151BQ8IW70 566 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 COL26A1Q96A83 441 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 LRRC1Q9BTT6 524 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 SLC25A23Q9BV35 468 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 SGPP1Q9BX95 441 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 SLC26A1Q9H2B4 701 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 WDR54Q9H977 334 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 ZNF304Q9HCX3 659 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 CTSFQ9UBX1 484 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 IKZF3Q9UKT9 509 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 SH2B3Q9UQQ2 575 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 PCSK5Q92824 1860 aa22.79■■□□□ 1.24
SHMT1-206ENST00000579558 BSNQ9UPA5 3926 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 ESYT3A0FGR9 886 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 FAM159BA6NKW6 160 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 PEX12O00623 359 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 GUCA1CO95843 209 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 MAGEA4P43358 317 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 NKG7Q16617 165 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 LCTLQ6UWM7 567 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 SBSNQ6UWP8 590 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 ASB18Q6ZVZ8 466 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 CYS1Q717R9 158 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 CEP97Q8IW35 865 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 ATL1Q8WXF7 558 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 FBXL8Q96CD0 374 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 CPNE1Q99829 537 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 POPDC3Q9HBV1 291 aa22.78■■□□□ 1.24
SHMT1-206ENST00000579558 NXT1Q9UKK6 140 aaKnown RBP22.78■■□□□ 1.24
SHMT1-206ENST00000579558 NOVA2Q9UNW9 492 aaKnown RBP22.78■■□□□ 1.24
SHMT1-206ENST00000579558 NPEPPSL1A6NEC2 478 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 TXNDC9O14530 226 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 CSNK1G2P78368 415 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 POU4F1Q01851 419 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 PPP1R32Q7Z5V6 425 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 OR56A3Q8NH54 315 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 ANKRD7Q92527 254 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 PYCR2Q96C36 320 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 SPSB2Q99619 263 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 HAUS8Q9BT25 410 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 SOX17Q9H6I2 414 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-206ENST00000579558 GPAMQ9HCL2 828 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 ANAPC2Q9UJX6 822 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 CDC14AQ9UNH5 594 aa22.77■■□□□ 1.24
SHMT1-206ENST00000579558 MTO1Q9Y2Z2 717 aaKnown RBP22.77■■□□□ 1.24
SHMT1-206ENST00000579558 PCDHGA9Q9Y5G4 932 aaKnown RBP22.77■■□□□ 1.24
SHMT1-206ENST00000579558 CDC7O00311 574 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 P2RX6O15547 441 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 PDGFAP04085 211 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 CDH1P12830 882 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 FBLP22087 321 aaKnown RBP22.76■■□□□ 1.23
SHMT1-206ENST00000579558 GP5P40197 560 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 PGDP52209 483 aa22.76■■□□□ 1.23
SHMT1-206ENST00000579558 RPS15AP62244 130 aaKnown RBP22.76■■□□□ 1.23
SHMT1-206ENST00000579558 PPP1R3AQ16821 1122 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms