RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TARM1B6A8C7 271 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 E7EQ34 232 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 SNUPNO95149 360 aaKnown RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 TIAF1O95411 115 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 PROCP04070 461 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 NTRK1P04629 796 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 F7P08709 466 aaPredicted RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 NEFHP12036 1026 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 TAC1P20366 129 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 GRK2P25098 689 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 PEBP1P30086 187 aaKnown RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 CSHL1Q14406 222 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 CYP2A13Q16696 494 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 CRTC2Q53ET0 693 aaPredicted RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 ZC3H12BQ5HYM0 836 aaKnown RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 KIAA1614Q5VZ46 1190 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 ATG16L1Q676U5 607 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 TRIM73Q86UV7 250 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 LMNTD1Q8N9Z9 388 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 ARMC2Q8NEN0 867 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 FLVCR1-AS1Q8TAF5 88 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 CD200R1Q8TD46 325 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 ASB11Q8WXH4 323 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 ZUFSPQ96AP4 578 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 CLIP3Q96DZ5 547 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 IL17FQ96PD4 163 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 ARHGAP9Q9BRR9 750 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 SLC12A9Q9BXP2 914 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 NSRP1Q9H0G5 558 aaKnown RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 KLHL25Q9H0H3 589 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 EPN3Q9H201 632 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 IGSF5Q9NSI5 407 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 SLC17A7Q9P2U7 560 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 COPG2Q9UBF2 871 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 TSR3Q9UJK0 312 aaKnown RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 CROTQ9UKG9 612 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 RALYQ9UKM9 306 aaKnown RBP12.91□□□□□ -0.34
CLK3-218ENST00000566926 PLCL2Q9UPR0 1127 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 MED16Q9Y2X0 877 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 COL6A6A6NMZ7 2263 aa12.91□□□□□ -0.34
CLK3-218ENST00000566926 FER1L5A0AVI2 2057 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 SYCE1LA8MT33 242 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 ARHGEF33A8MVX0 844 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 MYO1CO00159 1063 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 RECKO95980 971 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 BPGMP07738 259 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 MYL2P10916 166 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 CPA3P15088 417 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 TCN2P20062 427 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 NAA20P61599 178 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 RPS15P62841 145 aaKnown RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 IRF9Q00978 393 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 TIAL1Q01085 375 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLK3-218ENST00000566926 DNASE1L3Q13609 305 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 ZNF460Q14592 562 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 SOWAHCQ53LP3 525 aaPredicted RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 TLDC1Q6P9B6 456 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 PAQR3Q6TCH7 311 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 ZYG11AQ6WRX3 759 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 ADAMTSL2Q86TH1 951 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 NUDCD3Q8IVD9 361 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 CPNE9Q8IYJ1 553 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 MYO1HQ8N1T3 1032 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 PLD6Q8N2A8 252 aaKnown RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 C2orf73Q8N5S3 287 aaPredicted RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 OR1L3Q8NH93 324 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 GIMAP7Q8NHV1 300 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 STAG3L4Q8TBR4 150 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 KCTD4Q8WVF5 259 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 SMPDL3AQ92484 453 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 STARD8Q92502 1023 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 SLC39A7Q92504 469 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 TTC9Q92623 222 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 CHMP6Q96FZ7 201 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 SCYL1Q96KG9 808 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 GPR78Q96P69 363 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 SLC30A3Q99726 388 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 DPH2Q9BQC3 489 aaPredicted RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 GPR87Q9BY21 358 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 ACTR5Q9H9F9 607 aaPredicted RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 UTP6Q9NYH9 597 aaKnown RBP12.9□□□□□ -0.34
CLK3-218ENST00000566926 TMEM216Q9P0N5 145 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 XPR1Q9UBH6 696 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 CIDEBQ9UHD4 219 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 EMCNQ9ULC0 261 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 PCDHGA6Q9Y5G7 932 aa12.9□□□□□ -0.34
CLK3-218ENST00000566926 GMNCA6NCL1 334 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 PABPN1LA6NDY0 278 aaKnown RBP12.89□□□□□ -0.35
CLK3-218ENST00000566926 GFYI3L273 518 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 MEN1O00255 615 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 PRICKLE3O43900 615 aaPredicted RBP12.89□□□□□ -0.35
CLK3-218ENST00000566926 KERAO60938 352 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 KATNA1O75449 491 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 OR2B3O76000 313 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 CCNDBP1O95273 360 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 C8GP07360 202 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 ERGP11308 486 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 SFTPCP11686 197 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 CD1DP15813 335 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 WT1P19544 449 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms