RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 STT3BQ8TCJ2 826 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 ALKBH8Q96BT7 664 aaKnown RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 LINGO1Q96FE5 620 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 VPS50Q96JG6 964 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 HIST1H2AHQ96KK5 128 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 C10orf90Q96M02 699 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 KRT12Q99456 494 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 HIST1H2AJQ99878 128 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 H2AFJQ9BTM1 129 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 CRB3Q9BUF7 120 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 ZNF552Q9H707 407 aaPredicted RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 CCDC177Q9NQR7 707 aaPredicted RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 SEMA3GQ9NS98 782 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 TMEM184CQ9NVA4 438 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 CUEDC1Q9NWM3 386 aaPredicted RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 LUZP4Q9P127 313 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 FBXL4Q9UKA2 621 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 VWA7Q9Y334 891 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 TEX264Q9Y6I9 313 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 PCM1Q15154 2024 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 PCSK5Q92824 1860 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 MYO18BQ8IUG5 2567 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 EFCAB8A8MWE9 144 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 SOCS6O14544 535 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 HAT1O14929 419 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 SLC16A5O15375 505 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 VPS4BO75351 444 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 ZGLP1P0C6A0 271 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 HRH2P25021 359 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 ITGA3P26006 1051 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 SOX8P57073 446 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 KLC1Q07866 573 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 VWA2Q5GFL6 755 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 HECTD2Q5U5R9 776 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 GARNL3Q5VVW2 1013 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 PRAMEF13Q5VWM6 474 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 TRMT10BQ6PF06 316 aaKnown RBP19.75■□□□□ 0.75
CLN3-219ENST00000565778 KIRREL2Q6UWL6 708 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 GALNT7Q86SF2 657 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 MMABQ96EY8 250 aaPredicted RBP19.75■□□□□ 0.75
CLN3-219ENST00000565778 PCBD2Q9H0N5 130 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 ATG10Q9H0Y0 220 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 SYNPO2LQ9H987 977 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 PLAC1Q9HBJ0 212 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 MAP10Q9P2G4 905 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 VPS4AQ9UN37 437 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 HS3ST3B1Q9Y662 390 aa19.75■□□□□ 0.75
CLN3-219ENST00000565778 PABPN1LA6NDY0 278 aaKnown RBP19.74■□□□□ 0.75
CLN3-219ENST00000565778 PRPF4O43172 522 aaKnown RBP eCLIP19.74■□□□□ 0.75
CLN3-219ENST00000565778 IPO13O94829 963 aaKnown RBP19.74■□□□□ 0.75
CLN3-219ENST00000565778 SEC31AO94979 1220 aaKnown RBP19.74■□□□□ 0.75
CLN3-219ENST00000565778 CD97P48960 835 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 PDIA2Q13087 525 aaKnown RBP19.74■□□□□ 0.75
CLN3-219ENST00000565778 SP140Q13342 867 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 NAE1Q13564 534 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 SLC6A19Q695T7 634 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 AGTRAPQ6RW13 159 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 PARP9Q8IXQ6 854 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 MVB12AQ96EY5 273 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 TRIM54Q9BYV2 358 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 TRPC4Q9UBN4 977 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 C3orf18Q9UK00 162 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 SNX24Q9Y343 169 aa19.74■□□□□ 0.75
CLN3-219ENST00000565778 ALOX12BO75342 701 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 SORBS2O94875 1100 aaKnown RBP19.73■□□□□ 0.75
CLN3-219ENST00000565778 ANXA5P08758 320 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 PGGT1BP53609 377 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 TBPL1P62380 186 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 UBAP2LQ14157 1087 aaKnown RBP19.73■□□□□ 0.75
CLN3-219ENST00000565778 INPP5JQ15735 1006 aaPredicted RBP19.73■□□□□ 0.75
CLN3-219ENST00000565778 NDUFA9Q16795 377 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 TUBB8Q3ZCM7 444 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 PLEKHN1Q494U1 663 aaPredicted RBP19.73■□□□□ 0.75
CLN3-219ENST00000565778 IRAK1BP1Q5VVH5 260 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 STEAP4Q687X5 459 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 FAM45BPQ6NSW5 357 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 MBOAT1Q6ZNC8 495 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 LAPTM4BQ86VI4 370 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 C17orf64Q86WR6 236 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 ZADH2Q8N4Q0 377 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 FBXO36Q8NEA4 188 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 FAM45AQ8TCE6 357 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 TM9SF4Q92544 642 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 PNPLA2Q96AD5 504 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 WDR83Q9BRX9 315 aaKnown RBP19.73■□□□□ 0.75
CLN3-219ENST00000565778 CORO1CQ9ULV4 474 aaPredicted RBP19.73■□□□□ 0.75
CLN3-219ENST00000565778 MAP4K5Q9Y4K4 846 aa19.73■□□□□ 0.75
CLN3-219ENST00000565778 A0A0A6YYC8 382 aaPredicted RBP19.72■□□□□ 0.75
CLN3-219ENST00000565778 I3L1I5 382 aaPredicted RBP19.72■□□□□ 0.75
CLN3-219ENST00000565778 FFAR3O14843 346 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 GPR42O15529 346 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 SAT1P21673 171 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 EMP2P54851 167 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 MRPS25P82663 173 aaKnown RBP19.72■□□□□ 0.75
CLN3-219ENST00000565778 MGAT5Q09328 741 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 DSG2Q14126 1118 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 PHKG1Q16816 387 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 OR11G2Q8NGC1 345 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 DRC3Q9H069 523 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 ARL15Q9NXU5 204 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms