RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZNF404Q494X3 552 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 CCDC92Q53HC0 331 aaPredicted RBP12.8□□□□□ -0.36
CLN3-210ENST00000563874 PRAMEF9Q5VWM5 478 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 NEK5Q6P3R8 708 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 FUT10Q6P4F1 479 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 C17orf99Q6UX52 265 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PTOV1Q86YD1 416 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SYTL1Q8IYJ3 562 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SOCS4Q8WXH5 440 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 STARD8Q92502 1023 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 NELL1Q92832 810 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 TMEM184CQ9NVA4 438 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 MARCH5Q9NX47 278 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 RNF6Q9Y252 685 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SLC22A14Q9Y267 594 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 YY2O15391 372 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PRPS2P11908 318 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 CKBP12277 381 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 GRK5P34947 590 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 CSKP41240 450 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SLC11A1P49279 550 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PCYT1AP49585 367 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 NOXRED1Q6NXP6 359 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 LINC00299Q6ZSB3 139 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 RFLNAQ6ZTI6 216 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 UBE2R2Q712K3 238 aaPredicted RBP12.8□□□□□ -0.36
CLN3-210ENST00000563874 SYT12Q8IV01 421 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SLC38A4Q969I6 547 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 BBS2Q9BXC9 721 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SLC29A3Q9BZD2 475 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 CCNB1IP1Q9NPC3 277 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 GABRQQ9UN88 632 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PCDHGA6Q9Y5G7 932 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 HSPE1-MOB4S4R3N1 261 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 M0R082 166 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 EPN2O95208 641 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 DNTTP04053 509 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 CCR7P32248 378 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SLC19A1P41440 591 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PPP3CCP48454 512 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 IDH2P48735 452 aaKnown RBP12.8□□□□□ -0.36
CLN3-210ENST00000563874 SF3B4Q15427 424 aaKnown RBP eCLIP12.8□□□□□ -0.362e-7■■■■□ 24.8
CLN3-210ENST00000563874 GPR162Q16538 588 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 UGT8Q16880 541 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 ATAD3BQ5T9A4 648 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SERPINA11Q86U17 422 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 GALNT13Q8IUC8 556 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 OR52J3Q8NH60 311 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 UBTD2Q8WUN7 234 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 CLIP3Q96DZ5 547 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 SNX6Q9UNH7 406 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 ERVW-1Q9UQF0 538 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 TESMINQ9Y4I5 508 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 MAGEB17A8MXT2 336 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 EIF3FO00303 357 aaPredicted RBP12.79□□□□□ -0.36
CLN3-210ENST00000563874 KCNK2O95069 426 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 OPN1SWP03999 348 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 COX7A2P14406 83 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 RRM2P31350 389 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 NR4A2P43354 598 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CRISP3P54108 245 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 TIGD6Q17RP2 521 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 DUOXA1Q1HG43 343 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CHCHD4Q8N4Q1 142 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 GPR26Q8NDV2 337 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 DNAJB8Q8NHS0 232 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 TESCQ96BS2 214 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 MTERF1Q99551 399 aaKnown RBP12.79□□□□□ -0.36
CLN3-210ENST00000563874 RPS6KA6Q9UK32 745 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 BTBD3Q9Y2F9 522 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CLDN24A6NM45 220 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 PSMD11O00231 422 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 SNPHO15079 494 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 TRBC1P01850 177 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 HSMCR30P0CW71 290 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CCND3P30281 292 aaPredicted RBP12.79□□□□□ -0.36
CLN3-210ENST00000563874 TTLL9Q3SXZ7 439 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 LRRC73Q5JTD7 316 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CHST9Q7L1S5 443 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CYP2U1Q7Z449 544 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 HEATR4Q86WZ0 1026 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 VRK3Q8IV63 474 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 APCDD1Q8J025 514 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 NXPE1Q8N323 547 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 CLIP4Q8N3C7 705 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 SH3KBP1Q96B97 665 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 QPCTLQ9NXS2 382 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 GPR83Q9NYM4 423 aa12.79□□□□□ -0.36
CLN3-210ENST00000563874 AGAP5A6NIR3 686 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 LAMP1P11279 417 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 AMD1P17707 334 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 ALOX12P18054 663 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 BCL2L1Q07817 233 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CDH18Q13634 790 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 BOP1Q14137 746 aaKnown RBP12.78□□□□□ -0.36
CLN3-210ENST00000563874 MACC1Q6ZN28 852 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 ZSWIM9Q86XI8 627 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CCDC103Q8IW40 242 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 TTPALQ9BTX7 342 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 ROGDIQ9GZN7 287 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms