RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 HP1BP3Q5SSJ5 553 aaPredicted RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 RNASEH2BQ5TBB1 312 aaKnown RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 ZNF425Q6IV72 752 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 LINC00696Q6ZRV3 163 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 Q6ZS92 163 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 UBE2R2Q712K3 238 aaPredicted RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 KCNMB4Q86W47 210 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 AMER2Q8N7J2 671 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 FBXO15Q8NCQ5 510 aaPredicted RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 DNAJB14Q8TBM8 379 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 ACTRT1Q8TDG2 376 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 EEF1AKMT1Q8WVE0 214 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 RERGQ96A58 199 aaPredicted RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 ALKBH8Q96BT7 664 aaKnown RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 MMABQ96EY8 250 aaPredicted RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 CNDP1Q96KN2 507 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 PRAP1Q96NZ9 151 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 LHPPQ9H008 270 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 DDX47Q9H0S4 455 aaKnown RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 ZNF160Q9HCG1 818 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 UTP6Q9NYH9 597 aaKnown RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 ASIC3Q9UHC3 531 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 SNX12Q9UMY4 172 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 NTNG1Q9Y2I2 539 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 PCM1Q15154 2024 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 MDC1Q14676 2089 aaKnown RBP9.73□□□□□ -0.85
LDLR-214ENST00000560628 PTPN13Q12923 2485 aa9.73□□□□□ -0.85
LDLR-214ENST00000560628 GOLGA6L10A0A0M3HER8 536 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MAP2K7O14733 419 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 P2RX6O15547 441 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 FOXS1O43638 330 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 KLHL18O94889 574 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 CBX6O95503 412 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 HEXBP07686 556 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 ANXA5P08758 320 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 ACPPP15309 386 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 PGAM1P18669 254 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 GABRB3P28472 473 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 IMPA1P29218 277 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 SKIV2L2P42285 1042 aaKnown RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 FNTAP49354 379 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 PGGT1BP53609 377 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 EMP3P54852 163 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 SNRPNP63162 240 aaKnown RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 ABATP80404 500 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MAT1AQ00266 395 aaKnown RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 TIAL1Q01085 375 aaKnown RBP eCLIP9.72□□□□□ -0.85
LDLR-214ENST00000560628 DHX9Q08211 1270 aaKnown RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 PTK6Q13882 451 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 CRYMQ14894 314 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 BBS9Q3SYG4 887 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MSS51Q4VC12 460 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 C4orf17Q53FE4 359 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 ATG9BQ674R7 924 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MBOAT1Q6ZNC8 495 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 IGDCC3Q8IVU1 814 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 LMNTD2Q8IXW0 634 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 LRRC56Q8IYG6 542 aaPredicted RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 AMER3Q8N944 861 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 C2CD4AQ8NCU7 369 aaPredicted RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 CATSPER1Q8NEC5 780 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MCOLN3Q8TDD5 553 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 SSC4DQ8WTU2 575 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 VPS50Q96JG6 964 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 PWWP2AQ96N64 755 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MACROD1Q9BQ69 325 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 WDR77Q9BQA1 342 aaPredicted RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 FAM167BQ9BTA0 163 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 TRMT6Q9UJA5 497 aaKnown RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 ADAMTS6Q9UKP5 1117 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 MRPS2Q9Y399 296 aaKnown RBP9.72□□□□□ -0.85
LDLR-214ENST00000560628 PCDHGA10Q9Y5H3 936 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 COMMD10Q9Y6G5 202 aa9.72□□□□□ -0.85
LDLR-214ENST00000560628 FLNCQ14315 2725 aa9.71□□□□□ -0.85
LDLR-214ENST00000560628 IGLV3-12A0A075B6K2 115 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 NSG1A0A0A6YYJ2 146 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 A1L4Q6 167 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 ANKUB1A6NFN9 424 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 IDSB3KWA1 339 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 DNALI1O14645 258 aaPredicted RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 ZSCAN12O43309 604 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 HPP00738 406 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 AHSGP02765 367 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 EZRP15311 586 aaKnown RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 CXCR2P25025 360 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 SLC26A3P40879 764 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 CDKN2DP55273 166 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 EEF1A2Q05639 463 aaKnown RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 NAE1Q13564 534 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 DSG2Q14126 1118 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 RBM20Q5T481 1227 aaKnown RBP9.71□□□□□ -0.86
LDLR-214ENST00000560628 GARNL3Q5VVW2 1013 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 UGT3A1Q6NUS8 523 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 PAQR3Q6TCH7 311 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 IGFL2Q6UWQ7 119 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 ISLR2Q6UXK2 745 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 NDUFAF7Q7L592 441 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 KBTBD2Q8IY47 623 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 SHISA5Q8N114 240 aa9.71□□□□□ -0.86
LDLR-214ENST00000560628 ARHGEF39Q8N4T4 335 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms