RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZNF366Q8N895 744 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 L3MBTL4Q8NA19 623 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 TRUB1Q8WWH5 349 aaKnown RBP12.47□□□□□ -0.41
LDLR-207ENST00000558013 ZNF641Q96N77 438 aaPredicted RBP12.47□□□□□ -0.41
LDLR-207ENST00000558013 TMEM121BQ9BXQ6 578 aaPredicted RBP12.47□□□□□ -0.41
LDLR-207ENST00000558013 DNAJC11Q9NVH1 559 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 ERGIC3Q9Y282 383 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 GOLGA4Q13439 2230 aaKnown RBP12.47□□□□□ -0.41
LDLR-207ENST00000558013 MAGEB17A8MXT2 336 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 PCDHGA12O60330 932 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 GABARAPL2P60520 117 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 OCA2Q04671 838 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 EPS8Q12929 822 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 NAE1Q13564 534 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 DOC2AQ14183 400 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 HKDC1Q2TB90 917 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 GPR153Q6NV75 609 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 ZNF852Q6ZMS4 543 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 LRRC70Q7Z2Q7 622 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 FIBINQ8TAL6 211 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 RORBQ92753 470 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 OR4K3Q96R72 315 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 NAALAD2Q9Y3Q0 740 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 REV3LO60673 3130 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 TMEM247A6NEH6 219 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 GABRR3A8MPY1 467 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 ARHGEF33A8MVX0 844 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 GFYI3L273 518 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 M0R129 80 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 ZSCAN9O15535 394 aaPredicted RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 FABP3P05413 133 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 KRT20P35900 424 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 SNRPD1P62314 119 aaKnown RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 RELAQ04206 551 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 GAB1Q13480 694 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 TSTA3Q13630 321 aaPredicted RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 RAB33AQ14088 237 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 PAGE2BQ5JRK9 111 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 AHSA2Q719I0 299 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 ANKRD13BQ86YJ7 626 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 OR52J3Q8NH60 311 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 FBLIM1Q8WUP2 373 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 NELL1Q92832 810 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 ECHDC3Q96DC8 303 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 MAGED4Q96JG8 741 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 HHIPQ96QV1 700 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 LYSMD1Q96S90 227 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 SLC46A2Q9BY10 475 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 POLE4Q9NR33 117 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 HCFC1R1Q9NWW0 138 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 RAPGEFL1Q9UHV5 662 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 SAMD4AQ9UPU9 718 aaKnown RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 PLXNB3Q9ULL4 1909 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 IGLV3-16A0A075B6K0 115 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 SAP18O00422 153 aaKnown RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 NUAK1O60285 661 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 WEE1P30291 646 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 OR1E2P47887 323 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 CTSCP53634 463 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 SYT16Q17RD7 645 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.46□□□□□ -0.41
LDLR-207ENST00000558013 IER5LQ5T953 404 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 RNF165Q6ZSG1 346 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 HORMAD1Q86X24 394 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 CHPT1Q8WUD6 406 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 VWCEQ96DN2 955 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 KCNC2Q96PR1 638 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 NEURL2Q9BR09 285 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 TPT1P8Q9HAU6 139 aa12.46□□□□□ -0.41
LDLR-207ENST00000558013 CHCHD3Q9NX63 227 aaKnown RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 THUMPD1Q9NXG2 353 aaKnown RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 LSM7Q9UK45 103 aaKnown RBP12.46□□□□□ -0.41
LDLR-207ENST00000558013 TMEM229AB2RXF0 380 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 LEFTY2O00292 366 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 PCDH7O60245 1069 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 WBP4O75554 376 aaKnown RBP12.46□□□□□ -0.42
LDLR-207ENST00000558013 EPN2O95208 641 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 NADKO95544 446 aaPredicted RBP12.46□□□□□ -0.42
LDLR-207ENST00000558013 CCDC159P0C7I6 412 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 CBSLP0DN79 551 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 PDHA2P29803 388 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 C21orf33P30042 268 aaPredicted RBP12.46□□□□□ -0.42
LDLR-207ENST00000558013 CBSP35520 551 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 CCR2P41597 374 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 BDKRB1P46663 353 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 RXRGP48443 463 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 MTAPQ13126 283 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 DNASE1L3Q13609 305 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 CLCA4Q14CN2 919 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 RGS21Q2M5E4 152 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 PRSS36Q5K4E3 855 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 ANGPTL8Q6UXH0 198 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 FAM43BQ6ZT52 329 aaPredicted RBP12.46□□□□□ -0.42
LDLR-207ENST00000558013 TSEN54Q7Z6J9 526 aaKnown RBP12.46□□□□□ -0.42
LDLR-207ENST00000558013 SERPINA11Q86U17 422 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 FAM217AQ8IXS0 508 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 C1orf52Q8N6N3 182 aaKnown RBP12.46□□□□□ -0.42
LDLR-207ENST00000558013 OR4K1Q8NGD4 311 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 DUSP21Q9H596 190 aa12.46□□□□□ -0.42
LDLR-207ENST00000558013 KRT84Q9NSB2 600 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms