RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 OR5AK3PQ8NH89 298 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 ZFYVE19Q96K21 471 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 CCDC115Q96NT0 180 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 NIPSNAP1Q9BPW8 284 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 CDADC1Q9BWV3 514 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 FAM126AQ9BYI3 521 aaPredicted RBP11.96□□□□□ -0.49
LDLR-205ENST00000557933 REEP1Q9H902 201 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 THG1LQ9NWX6 298 aaKnown RBP11.96□□□□□ -0.49
LDLR-205ENST00000557933 EHD3Q9NZN3 535 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 DHRS7Q9Y394 339 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 FNDC1Q4ZHG4 1894 aaPredicted RBP11.96□□□□□ -0.49
LDLR-205ENST00000557933 AGAP5A6NIR3 686 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 FKTNO75072 461 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 ADAMTS4O75173 837 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 WDR47O94967 919 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 IL6P05231 212 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 SSTR4P31391 388 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 RYKP34925 604 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 CASP3P42574 277 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 DBPQ10586 325 aaPredicted RBP11.96□□□□□ -0.5
LDLR-205ENST00000557933 CHRNA6Q15825 494 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 CLLU1OSQ5K130 101 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 KIAA1614Q5VZ46 1190 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 KDM4DQ6B0I6 523 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 TMC5Q6UXY8 1006 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 USP43Q70EL4 1123 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 SNX20Q7Z614 316 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 CYP4Z2PQ8N1L4 340 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 IL4I1Q96RQ9 567 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 APOL4Q9BPW4 351 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 CD244Q9BZW8 370 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 ARHGAP39Q9C0H5 1083 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 RNF38Q9H0F5 515 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 LINC00597Q9H2U6 94 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 FBXO44Q9H4M3 255 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 NECTIN3Q9NQS3 549 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 FBXO8Q9NRD0 319 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 TBC1D14Q9P2M4 693 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 TMED5Q9Y3A6 229 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 NAALAD2Q9Y3Q0 740 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 PCDHGA6Q9Y5G7 932 aa11.96□□□□□ -0.5
LDLR-205ENST00000557933 TAF4O00268 1085 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 STK16O75716 305 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 CSF2P04141 144 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 IGFBP1P08833 259 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 LAMP1P11279 417 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 EPORP19235 508 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 SDHBP21912 280 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 PTPN6P29350 595 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 CORO1AP31146 461 aaKnown RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 CDH12P55289 794 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 IRF3Q14653 427 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 PTCHD3Q3KNS1 767 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 BCL7AQ4VC05 210 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 CCSAPQ6IQ19 270 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 ZNF852Q6ZMS4 543 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 NRARPQ7Z6K4 114 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 DEPDC4Q8N2C3 294 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 SLC5A8Q8N695 610 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 OR4K1Q8NGD4 311 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 COPS8Q99627 209 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 PSD2Q9BQI7 771 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 C1QTNF3Q9BXJ4 246 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ITPAQ9BY32 194 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 CEP44Q9C0F1 390 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 HOXD1Q9GZZ0 328 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 RMND5AQ9H871 391 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 CHD7Q9P2D1 2997 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 OSGIN1Q9UJX0 560 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 MYO10Q9HD67 2058 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 EVPLLA8MZ36 301 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 CD160O95971 181 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ESR1P03372 595 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ALOX5P09917 674 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 COX7A2P14406 83 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 NRIP1P48552 1158 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 RPIAP49247 311 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 GZMMP51124 257 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 RAB15P59190 212 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ZNF177Q13360 481 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 TOP3AQ13472 1001 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 ARMCX4Q5H9R4 360 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 IER5LQ5T953 404 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 MFSD4BQ5TF39 518 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 SERPINA13PQ6UXR4 307 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 RTN4RL1Q86UN2 441 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 SYT12Q8IV01 421 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 SETD9Q8NE22 299 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 NELL1Q92832 810 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ITPKCQ96DU7 683 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 ZNF486Q96H40 463 aaPredicted RBP11.95□□□□□ -0.5
LDLR-205ENST00000557933 MMP28Q9H239 520 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 IL26Q9NPH9 171 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 TIGARQ9NQ88 270 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 IL17CQ9P0M4 197 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 GPSM3Q9Y4H4 160 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 EYSQ5T1H1 3165 aa11.95□□□□□ -0.5
LDLR-205ENST00000557933 C2orf78A6NCI8 922 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 DRGXA6NNA5 263 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms