RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 KLK4Q9Y5K2 254 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 PRSS21Q9Y6M0 314 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 GLYATL1P3A0A0U1RQE8 302 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 M0R082 166 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 RGS13O14921 159 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ADAMDEC1O15204 470 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 GPR39O43194 453 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 DLGAP3O95886 979 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 APOA1P02647 267 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ABCB1P08183 1280 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 EPORP19235 508 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 CORO1AP31146 461 aaKnown RBP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 SPAM1P38567 509 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 NSG1P42857 185 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ELOAQ14241 798 aaKnown RBP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 LAPTM4AQ15012 233 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 TRIM71Q2Q1W2 868 aaKnown RBP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 TIMM50Q3ZCQ8 353 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 COLEC12Q5KU26 742 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 OR4F3Q6IEY1 312 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 NOXRED1Q6NXP6 359 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 NXPE1Q8N323 547 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 SYNPOQ8N3V7 929 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 DENND6BQ8NEG7 585 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 TRPV1Q8NER1 839 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 OR10Q1Q8NGQ4 319 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 HOXD1Q9GZZ0 328 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 IL26Q9NPH9 171 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 POLE4Q9NR33 117 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 DOCK3Q8IZD9 2030 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 SCAMP3O14828 347 aaKnown RBP15.77■□□□□ 0.12
SHMT2-231ENST00000557433 SLC16A5O15375 505 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 TBX1O43435 398 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 UGDHO60701 494 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 SOCS5O75159 536 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 STC2O76061 302 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 VNN2O95498 520 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 LATS1O95835 1130 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 CYBAP13498 195 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 ANXA8P13928 327 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 CSNK1DP48730 415 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 SP140Q13342 867 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 TEAD4Q15561 434 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 IQCCQ4KMZ1 466 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 RNF19BQ6ZMZ0 732 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 MTFMTQ96DP5 389 aaKnown RBP15.77■□□□□ 0.12
SHMT2-231ENST00000557433 C7orf34Q96L11 122 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 CCDC32Q9BV29 185 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 SLC12A9Q9BXP2 914 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 REXO4Q9GZR2 422 aaKnown RBP15.77■□□□□ 0.12
SHMT2-231ENST00000557433 CRISPLD1Q9H336 500 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 ZBTB20Q9HC78 741 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-231ENST00000557433 ENOPH1Q9UHY7 261 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 PNMA8BQ9ULN7 279 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-231ENST00000557433 PCDHB11Q9Y5F2 797 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 PCDHGA3Q9Y5H0 932 aa15.77■□□□□ 0.12
SHMT2-231ENST00000557433 SRCAPQ6ZRS2 3230 aa15.77■□□□□ 0.11
SHMT2-231ENST00000557433 FRMPD3Q5JV73 1810 aa15.77■□□□□ 0.11
SHMT2-231ENST00000557433 AGAP14A8MT82 685 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SUV39H1O43463 412 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 TRBC1P01850 177 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 HIST1H2AGP0C0S8 130 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-231ENST00000557433 HIST1H2ADP20671 130 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 GADD45AP24522 165 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 TACR1P25103 407 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SOX6P35712 828 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SLC6A12P48065 614 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 DUSP4Q13115 394 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SLC13A2Q13183 592 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SLC14A1Q13336 389 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 HKDC1Q2TB90 917 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 LRIT3Q3SXY7 679 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 FRG2Q64ET8 278 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 VTCN1Q7Z7D3 282 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SYT12Q8IV01 421 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 CLDN19Q8N6F1 224 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 GALNT6Q8NCL4 622 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 HTRA1Q92743 480 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 HIST1H2AHQ96KK5 128 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 FRG2BQ96QU4 278 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 HIST1H2AJQ99878 128 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 RHNO1Q9BSD3 238 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 H2AFJQ9BTM1 129 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 C6orf62Q9GZU0 229 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF106Q9H2Y7 1883 aaKnown RBP15.76■□□□□ 0.11
SHMT2-231ENST00000557433 AASSQ9UDR5 926 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SLCO3A1Q9UIG8 710 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 STOML2Q9UJZ1 356 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 POFUT2Q9Y2G5 429 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF840PA6NDX5 716 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 FAM47E-STBD1D6RA91 191 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SCN2BO60939 215 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 PRAMEF12O95522 483 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 KLKB1P03952 638 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 MPC1LP0DKB6 136 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 EPHA2P29317 976 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 PCGF2P35227 344 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 LIMK1P53667 647 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 PTPRRQ15256 657 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 SYT16Q17RD7 645 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms