RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	GSDMB	Q8TAX9	411 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	COG1	Q8WTW3	980 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	CT55	Q8WUE5	264 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	LPGAT1	Q92604	370 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	SLCO2A1	Q92959	643 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	TCTN2	Q96GX1	697 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	BIRC8	Q96P09	236 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	SERPINB12	Q96P63	405 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	TRAPPC9	Q96Q05	1148 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	OR2A14	Q96R47	310 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	NRTN	Q99748	197 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	MENT	Q9BUN1	341 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	GPR87	Q9BY21	358 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	SLC25A18	Q9H1K4	315 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	ACTL8	Q9H568	366 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	XKR8	Q9H6D3	395 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	KCND1	Q9NSA2	647 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	INTS10	Q9NVR2	710 aa	Known RBP	7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	POLH	Q9Y253	713 aa		7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	TDRKH	Q9Y2W6	561 aa	Known RBP	7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	MRPS18B	Q9Y676	258 aa	Known RBP	7.4	□□□□□ -1.22
SNHG1-223	ENST00000545440	CPAMD8	Q8IZJ3	1885 aa		7.4	□□□□□ -1.23
SNHG1-223	ENST00000545440	PCSK5	Q92824	1860 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	MAGEB16	A2A368	324 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SDR42E2	A6NKP2	422 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440		E7EQ34	232 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SHOX	O15266	292 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	AVIL	O75366	819 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CREG1	O75629	220 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	USP1	O94782	785 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	FKBP9	O95302	570 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	NTRK1	P04629	796 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	KLK3	P07288	261 aa	Predicted RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CD3E	P07766	207 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	HBQ1	P09105	142 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	FURIN	P09958	794 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PVR	P15151	417 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	TCP1	P17987	556 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CYP2A7	P20853	494 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CD9	P21926	228 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PTPN4	P29074	926 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PEBP1	P30086	187 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	ITGA1	P56199	1179 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SUMO1	P63165	101 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	NFATC3	Q12968	1075 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	DHX34	Q14147	1143 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	GRB7	Q14451	532 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	GBX1	Q14549	363 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PLEKHS1	Q5SXH7	462 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	ZNF470	Q6ECI4	717 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CASC4	Q6P4E1	433 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	FAM198B	Q6UWH4	519 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CES3	Q6UWW8	571 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CDHR3	Q6ZTQ4	885 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SYVN1	Q86TM6	617 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	TMEM135	Q86UB9	458 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CREG2	Q8IUH2	290 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	LMNTD2	Q8IXW0	634 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PPIL6	Q8IXY8	311 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	DSEL	Q8IZU8	1212 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SHISA5	Q8N114	240 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PLD6	Q8N2A8	252 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	RAB42	Q8N4Z0	105 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	NAT8L	Q8N9F0	302 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	OR2L8	Q8NGY9	312 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	OR1L3	Q8NH93	324 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	APOBEC4	Q8WW27	367 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	ANP32B	Q92688	251 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SLC22A18	Q96BI1	424 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	RNF31	Q96EP0	1072 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	CCDC120	Q96HB5	630 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PDLIM2	Q96JY6	352 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	ACTR5	Q9H9F9	607 aa	Predicted RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SPHK1	Q9NYA1	384 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	ZC3H7B	Q9UGR2	993 aa	Known RBP	7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	SERTAD3	Q9UJW9	196 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	PLAGL1	Q9UM63	463 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	AP1M2	Q9Y6Q5	423 aa		7.39	□□□□□ -1.23
SNHG1-223	ENST00000545440	MYO18B	Q8IUG5	2567 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	SHANK1	Q9Y566	2161 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	TRBV23-1	A0A0A0MS06	115 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	ZCWPW2	A0A1B0GU75	182 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	ISM1	B1AKI9	464 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	GOLGA8K	D6RF30	607 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440		H3BMH7	237 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	GOLGA8T	H3BQL2	631 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	GOLGA8M	H3BSY2	632 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	RASGRF2	O14827	1237 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	ZNF185	O15231	689 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	ZSCAN9	O15535	394 aa	Predicted RBP	7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	PRODH	O43272	600 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	NIPSNAP2	O75323	286 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	KATNA1	O75449	491 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	OR2B3	O76000	313 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	RAB40AL	P0C0E4	278 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	GABRA4	P48169	554 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	TERF1	P54274	439 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	PMS2	P54278	862 aa		7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	RPS15	P62841	145 aa	Known RBP	7.38	□□□□□ -1.23
SNHG1-223	ENST00000545440	IKZF1	Q13422	519 aa		7.38	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms