RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 EGR3Q06889 387 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 LRRC74AQ0VAA2 488 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CHAF1BQ13112 559 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PEX6Q13608 980 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 KYNUQ16719 465 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ALG11Q2TAA5 492 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GPR33Q49SQ1 333 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FASTKD1Q53R41 847 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FNBP1LQ5T0N5 605 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF648Q5T619 568 aaPredicted RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 STPG1Q5TH74 334 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 IYDQ6PHW0 289 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 KLHL17Q6TDP4 642 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 AFTPHQ6ULP2 937 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CES3Q6UWW8 571 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 USP51Q70EK9 711 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CENPUQ71F23 418 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MARK2Q7KZI7 788 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CPLX4Q7Z7G2 160 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MPP5Q8N3R9 675 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 AGBL5Q8NDL9 886 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 OR13J1Q8NGT2 312 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 HEXDCQ8WVB3 486 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ART4Q93070 314 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 STAMBPL1Q96FJ0 436 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 DCUN1D1Q96GG9 259 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 COX14Q96I36 57 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SIGLEC10Q96LC7 697 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF778Q96MU6 729 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FOXP3Q9BZS1 431 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 OR2AG1Q9H205 316 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FAM96AQ9H5X1 160 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 L2HGDHQ9H9P8 463 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 EPB41L5Q9HCM4 733 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MRPL40Q9NQ50 206 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FAM114A2Q9NRY5 505 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TM7SF3Q9NS93 570 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 RXFP3Q9NSD7 469 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SMOXQ9NWM0 555 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 VPS18Q9P253 973 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SPASTQ9UBP0 616 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 DNAJB9Q9UBS3 223 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 LPAR3Q9UBY5 353 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 APOBEC3BQ9UH17 382 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ZNHIT2Q9UHR6 403 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CNOT6Q9ULM6 557 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TMEM5Q9Y2B1 443 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SLC17A4Q9Y2C5 497 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GON4LQ3T8J9 2241 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 VPS13AQ96RL7 3174 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 OTOGLQ3ZCN5 2332 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TNRC6BQ9UPQ9 1833 aaKnown RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 PLXNA2O75051 1894 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 NEMP2A6NFY4 417 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 OR51F1A6NGY5 319 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 GPR89AB7ZAQ6 455 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 FCHO1O14526 889 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 GAPDHSO14556 408 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 CDX4O14627 284 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 SCAMP1O15126 338 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ADAM20O43506 726 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 VEGFDO43915 354 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 SDC3O75056 442 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 MTX2O75431 263 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 USP1O94782 785 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 CDK14O94921 469 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 VAPBO95292 243 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 TTC4O95801 387 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ESR1P03372 595 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 IVLP07476 585 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 RHOXF2BP0C7M4 288 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 GPR89BP0CG08 455 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF883P0CG24 379 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF8P17098 575 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ACRV1P26436 265 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 EPHA8P29322 1005 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 PPARGP37231 505 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ELK3P41970 407 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 STAT5AP42229 794 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 TRPC1P48995 793 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ACVR1Q04771 509 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 COX10Q12887 443 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 TMEM115Q12893 351 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 MALLQ13021 153 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 PDIA2Q13087 525 aaKnown RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 LASP1Q14847 261 aaKnown RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 NAA25Q14CX7 972 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ELOCQ15369 112 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 MAJINQ3KP22 176 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ANKRD20A4Q4UJ75 823 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 AARS2Q5JTZ9 985 aaKnown RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 GPRC6AQ5T6X5 926 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 LYPLAL1Q5VWZ2 237 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ATG16L1Q676U5 607 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 UNQ6494/PRO21346Q6UXR6 183 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ADGRG6Q86SQ4 1221 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 RBFAQ8N0V3 343 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 FSTL5Q8N475 847 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 DDHD1Q8NEL9 900 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 OR4L1Q8NH43 312 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms