RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 VRK3Q8IV63 474 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 ZDHHC21Q8IVQ6 265 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 FAM217AQ8IXS0 508 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 CACTIN-AS1Q8N1I8 211 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 Q96MT0 163 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 CCDC115Q96NT0 180 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 DCSTAMPQ9H295 470 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 SERHLQ9NQF3 203 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 LATS2Q9NRM7 1088 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 ANGPTL3Q9Y5C1 460 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 AGAP14A8MT82 685 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 RGS14O43566 566 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 PDYNP01213 254 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 GJA1P17302 382 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 BMPR1AP36894 532 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 RUNDC3AQ59EK9 446 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 ZNF648Q5T619 568 aaPredicted RBP12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 LSRQ86X29 649 aaPredicted RBP12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 PLPP6Q8IY26 295 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 NLGN4XQ8N0W4 816 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 LEMD2Q8NC56 503 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 OR52J3Q8NH60 311 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 DYNC2LI1Q8TCX1 351 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 KCNC2Q96PR1 638 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 KCNS3Q9BQ31 491 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 BEX2Q9BXY8 128 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 SMG9Q9H0W8 520 aaKnown RBP12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 LRTM1Q9HBL6 345 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 TMED5Q9Y3A6 229 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 CHD7Q9P2D1 2997 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 DNAH14Q0VDD8 3507 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 BNIP3LO60238 219 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 TULP3O75386 442 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 CXCL10P02778 98 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ITIH1P19827 911 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 MSH3P20585 1137 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 GADD45AP24522 165 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 PTPN6P29350 595 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 GRK5P34947 590 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ST13P50502 369 aaKnown RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 GZMMP51124 257 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ATN1P54259 1190 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 CREMQ03060 361 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 CBX2Q14781 532 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 TPGS2Q68CL5 300 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 LRRC66Q68CR7 880 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 NEK10Q6ZWH5 1172 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 LYSMD2Q8IV50 215 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 HS6ST3Q8IZP7 471 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 UBTD2Q8WUN7 234 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 HTATIP2Q9BUP3 242 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 C2orf49Q9BVC5 232 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 BTBD2Q9BX70 525 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 SLIRPQ9GZT3 109 aaKnown RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 C8orf4Q9NR00 106 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ERVK13-1Q9NX77 482 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ERVK-11Q9UQG0 969 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 INSL5Q9Y5Q6 135 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ZNF106Q9H2Y7 1883 aaKnown RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 GABARAPO95166 117 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 CHRM5P08912 532 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 EBLN1P0CF75 366 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 POU2F1P14859 743 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 CA8P35219 290 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 SPAM1P38567 509 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 LRIT3Q3SXY7 679 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 ADHFE1Q8IWW8 467 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 MYLIPQ8WY64 445 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 CHCHD6Q9BRQ6 235 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 BBS2Q9BXC9 721 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 KAT8Q9H7Z6 458 aaKnown RBP12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 GPRC5BQ9NZH0 403 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 KIF17Q9P2E2 1029 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 PPT2Q9UMR5 302 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 SNX6Q9UNH7 406 aa12.18□□□□□ -0.46
SFSWAP-208ENST00000539506 IFRD1O00458 451 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 TFECO14948 347 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 TPD52L2O43399 206 aaKnown RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 STK16O75716 305 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 EPB42P16452 691 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 HOXB9P17482 250 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 KRT20P35900 424 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 RETSATQ6NUM9 610 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 DOK6Q6PKX4 331 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 CCDC71Q8IV32 467 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 CHPFQ8IZ52 775 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 TTC29Q8NA56 475 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 PIK3C3Q8NEB9 887 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 OR51E2Q9H255 320 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 CREBZFQ9NS37 354 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 SIRT5Q9NXA8 310 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 TRPS1Q9UHF7 1281 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 VCANP13611 3396 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 PLXNB3Q9ULL4 1909 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 OBSL1O75147 1896 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 SLC28A1O00337 649 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 LATS1O95835 1130 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 AZGP1P25311 298 aaKnown RBP12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 AKT1P31749 480 aa12.17□□□□□ -0.46
SFSWAP-208ENST00000539506 RPIAP49247 311 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 202.5 ms