RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 FZD1Q9UP38 647 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 NOX1Q9Y5S8 564 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TNFRSF10BO14763 440 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 PRKCHP24723 683 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FMO3P31513 532 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FLT3LGP49771 235 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 SMSP52788 366 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 OC90Q02509 493 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 MAB21L1Q13394 359 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 DNASE1L3Q13609 305 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 SYT16Q17RD7 645 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FIP1L1Q6UN15 594 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 SUN3Q8TAQ9 357 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 NCSTNQ92542 709 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 NDRG1Q92597 394 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 PSMG2Q969U7 264 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FAM84AQ96KN4 292 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 DEFB118Q96PH6 123 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TMEM209Q96SK2 561 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 POLR3BQ9NW08 1133 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ATPIF1Q9UII2 106 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TMEM59LQ9UK28 342 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TCRBV7S2A1N4TA0A589 114 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 EDNRAP25101 427 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 DAOAP59103 153 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 LRRC32Q14392 662 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CDK10Q15131 360 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 KCTD19Q17RG1 926 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 SCGB2B2Q4G0G5 96 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 PITRM1Q5JRX3 1037 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CIR1Q86X95 450 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 C2orf15Q8WU43 125 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ESAMQ96AP7 390 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FAXDC2Q96IV6 333 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ADAD1Q96M93 576 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 DPYSL5Q9BPU6 564 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 NDC1Q9BTX1 674 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 NFS1Q9Y697 457 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TEX13DA0A0J9YY54 714 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 C2CD4BA6NLJ0 364 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 C9J4A7 227 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CLIC1O00299 241 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CST3P01034 146 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 MMP3P08254 477 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ACTR1BP42025 376 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ACTR1AP61163 376 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TUBA1BP68363 451 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ENPP2Q13822 863 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 GANABQ14697 944 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 PON3Q15166 354 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 RHEBQ15382 184 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 HGSNATQ68CP4 663 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TUBA1AQ71U36 451 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ERI1Q8IV48 349 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 JAGN1Q8N5M9 183 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 KCT2Q8NC54 265 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 PLA2G15Q8NCC3 412 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF350Q9GZX5 532 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CCDC86Q9H6F5 360 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 B3GAT2Q9NPZ5 323 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 PLCL2Q9UPR0 1127 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 C14orf166Q9Y224 244 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 WASF2Q9Y6W5 498 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ARL5CA6NH57 179 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CAPN14A8MX76 684 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 BPNT1O95861 308 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FESP07332 822 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 HCAR3P49019 387 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 AFF1P51825 1210 aaKnown RBP10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CD47Q08722 323 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 SPRED3Q2MJR0 410 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ZBED5Q49AG3 693 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 HFE2Q6ZVN8 426 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 NXPE1Q8N323 547 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 LNX2Q8N448 690 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 TCEAL3Q969E4 200 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 ACDQ96AP0 544 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 RGMAQ96B86 450 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 CCDC120Q96HB5 630 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 MAPKAP1Q9BPZ7 522 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 MAF1Q9H063 256 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 BRD7Q9NPI1 651 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 FBXW11Q9UKB1 542 aa10.38□□□□□ -0.75
CLIP1-209ENST00000537178 SH3D21A4FU49 640 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 VNN2O95498 520 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 IMPDH1P20839 514 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CD72P21854 359 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CTSOP43234 321 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 HERVK_113P63132 956 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SNTA1Q13424 505 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ADAM15Q13444 863 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SPIN3Q5JUX0 258 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CDKL4Q5MAI5 379 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 PCDH19Q8TAB3 1148 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 STON2Q8WXE9 905 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SLC7A6OSQ96CW6 309 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 PCED1BQ96HM7 432 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 AP1S3Q96PC3 154 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 IL4I1Q96RQ9 567 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ERVK-6Q9BXR3 956 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms