RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DOC2AQ14183 400 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 VMACQ2NL98 169 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.74□□□□□ -0.37
LDLR-203ENST00000535915 ACSM2BQ68CK6 577 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 OR2T5Q6IEZ7 315 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 LAIR2Q6ISS4 152 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 LILRA6Q6PI73 481 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 ZBTB46Q86UZ6 589 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 RAVER1Q8IY67 606 aaKnown RBP12.74□□□□□ -0.37
LDLR-203ENST00000535915 CLECL1Q8IZS7 167 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 OR2T29Q8NH02 315 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 WDR20Q8TBZ3 569 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 FNDC8Q8TC99 324 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 BARD1Q99728 777 aaKnown RBP12.74□□□□□ -0.37
LDLR-203ENST00000535915 HEPHQ9BQS7 1158 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 CCDC90BQ9GZT6 254 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 IL1RAPQ9NPH3 570 aa12.74□□□□□ -0.37
LDLR-203ENST00000535915 FADS2P1A8MWK0 482 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 hCG_2039718K7EN88 272 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 SLC16A6O15403 523 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 PRMT3O60678 531 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 UGDHO60701 494 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 SH3BGRLO75368 114 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 AP2A2O94973 939 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 DIRAS1O95057 198 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 KCNK5O95279 499 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 ZNF24P17028 368 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 EFNA1P20827 205 aaPredicted RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 GJA8P48165 433 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 WNT3P56703 355 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 NAE1Q13564 534 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 RAPSNQ13702 412 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 ARSIQ5FYB1 569 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 ADIPOR2Q86V24 386 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 ZZZ3Q8IYH5 903 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 NAT16Q8N8M0 369 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CNIH3Q8TBE1 160 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CYB5D2Q8WUJ1 264 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 SORCS1Q8WY21 1168 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 FOXJ1Q92949 421 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 IRF7Q92985 503 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CLP1Q92989 425 aaKnown RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 TMEM159Q96B96 161 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 TCEAL4Q96EI5 215 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 FCRL1Q96LA6 429 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 NODALQ96S42 347 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 RIBC2Q9H4K1 309 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 RPS6KA6Q9UK32 745 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 BAG5Q9UL15 447 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 RUVBL1Q9Y265 456 aaKnown RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 SH3PXD2BA1X283 911 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 WASH3PC4AMC7 463 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 TSPAN6O43657 245 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 BCL10O95999 233 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 FABP3P05413 133 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 ADH1AP07327 375 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CCL5P13501 91 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CYP4B1P13584 511 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 RYKP34925 604 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 PREPP48147 710 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 HNRNPFP52597 415 aaKnown RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 DCDC1P59894 354 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 PHEXP78562 749 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 IL18R1Q13478 541 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 POM121L1PQ3SYA9 428 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 ZC3H12BQ5HYM0 836 aaKnown RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 GTF2IRD2BQ6EKJ0 949 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 AGTRAPQ6RW13 159 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CEP68Q76N32 757 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 VTCN1Q7Z7D3 282 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 GTF2IRD2Q86UP8 949 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CYP4Z1Q86W10 505 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 TRAM1L1Q8N609 369 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 PIK3C3Q8NEB9 887 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 DDHD1Q8NEL9 900 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 DPH2Q9BQC3 489 aaPredicted RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 LINC00597Q9H2U6 94 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 SGK2Q9HBY8 427 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 FAM120CQ9NX05 1096 aaKnown RBP12.73□□□□□ -0.37
LDLR-203ENST00000535915 ERVW-1Q9UQF0 538 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 PTPRSQ13332 1948 aa12.73□□□□□ -0.37
LDLR-203ENST00000535915 CARNS1A5YM72 827 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 TRIM43BA6NCK2 446 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 TTC34A8MYJ7 566 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 SCN2BO60939 215 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 PSIP1O75475 530 aaKnown RBP12.72□□□□□ -0.37
LDLR-203ENST00000535915 MYO1DO94832 1006 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 FKBP9O95302 570 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 ITGAMP11215 1152 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 LAMP1P11279 417 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 GPX2P18283 190 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 XPAP23025 273 aaPredicted RBP12.72□□□□□ -0.37
LDLR-203ENST00000535915 KDELR2P33947 212 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 CDK5R2Q13319 367 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 SIM2Q14190 667 aaPredicted RBP12.72□□□□□ -0.37
LDLR-203ENST00000535915 ANKDD1AQ495B1 522 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 CCSMST1Q4G0I0 132 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 TMEM215Q68D42 235 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 ERICH5Q6P6B1 374 aa12.72□□□□□ -0.37
LDLR-203ENST00000535915 HORMAD1Q86X24 394 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms