RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SLC7A1P30825 629 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MSX2P35548 267 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 SREBF1P36956 1147 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 CEBPGP53567 150 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MFAP3P55082 362 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 CTSWP56202 376 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 WNT3AP56704 352 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 FOXL1Q12952 345 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 ASAH1Q13510 395 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TDGQ13569 410 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TOMM34Q15785 309 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 CCDC142Q17RM4 750 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 BMT2Q1RMZ1 405 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MICBQ29980 383 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 AP5B1Q2VPB7 878 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TRIM60Q495X7 471 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 GPR33Q49SQ1 333 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SLC9C1Q4G0N8 1177 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TAF1BQ53T94 588 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 C19orf54Q5BKX5 351 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 ARMCX4Q5H9R4 360 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PLAC9Q5JTB6 97 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 CLLU1Q5K131 121 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 GPATCH4Q5T3I0 446 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 MANEALQ5VSG8 457 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 UBE2UQ5VVX9 321 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 OR5M10Q6IEU7 315 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SLC30A6Q6NXT4 461 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 CDC73Q6P1J9 531 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PMF1Q6P1K2 205 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SLC27A4Q6P1M0 643 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TMEM81Q6P7N7 255 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 GLB1LQ6UWU2 654 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 KIAA1324Q6UXG2 1013 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 MEX3BQ6ZN04 569 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 TMPRSS11FQ6ZWK6 438 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SSX9Q7RTT3 188 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 APTXQ7Z2E3 356 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 R3HCC1LQ7Z5L2 792 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 USP37Q86T82 979 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MRPL52Q86TS9 123 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 NOXA1Q86UR1 476 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 FAM160B2Q86V87 743 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 FAM131BQ86XD5 332 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PHF13Q86YI8 300 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 C10orf53Q8N6V4 93 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 ZNF366Q8N895 744 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 ADPRHL1Q8NDY3 354 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SETD9Q8NE22 299 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 BBS1Q8NFJ9 593 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 OR8J2Q8NGG1 315 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MOSPD2Q8NHP6 518 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TRAPPC12Q8WVT3 735 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 CENPIQ92674 756 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 DCPSQ96C86 337 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 AP2M1Q96CW1 435 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MTERF3Q96E29 417 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 RRNAD1Q96FB5 475 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 PAGE5Q96GU1 130 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 RNF170Q96K19 258 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 WWC2-AS2Q96NR7 200 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 DACH2Q96NX9 599 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SLITRK1Q96PX8 696 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 CDCA3Q99618 268 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 INPP5KQ9BT40 448 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SPXQ9BT56 116 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MED18Q9BUE0 208 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 THAP2Q9H0W7 228 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 UPF3AQ9H1J1 476 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 NEUROG2Q9H2A3 272 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 GAL3ST2Q9H3Q3 398 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 COG4Q9H9E3 785 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 SEPSECSQ9HD40 501 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 AGPAT5Q9NUQ2 364 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PAK1IP1Q9NWT1 392 aaPredicted RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 DPP3Q9NY33 737 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 TMOD3Q9NYL9 352 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 LGALS13Q9UHV8 139 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 EIF2B4Q9UI10 523 aaKnown RBP5.35□□□□□ -1.55
CD44-236ENST00000533222 ST6GALNAC2Q9UJ37 374 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 ANAPC2Q9UJX6 822 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PSMD13Q9UNM6 376 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PLCL2Q9UPR0 1127 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 ERVW-1Q9UQF0 538 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 MAN2B2Q9Y2E5 1009 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 NAALAD2Q9Y3Q0 740 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PCDHAC2Q9Y5I4 1007 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 PUS1Q9Y606 427 aaKnown RBP eCLIP5.35□□□□□ -1.55
CD44-236ENST00000533222 PCM1Q15154 2024 aa5.35□□□□□ -1.55
CD44-236ENST00000533222 AGLP35573 1532 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 A0A0G2JMP0 313 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 BCLAF3A2AJT9 711 aaKnown RBP5.34□□□□□ -1.55
CD44-236ENST00000533222 C9orf170A2RU37 121 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 KRT87PA6NCN2 255 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 TRABD2BA6NFA1 517 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 SAC3D1A6NKF1 404 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 RFPL4AA6NLU0 287 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 EFCAB7A8K855 629 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 KLRF2D3W0D1 207 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 NPIPB8E9PQR5 432 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms