RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 AP4B1Q9Y6B7 739 aa14.26□□□□□ -0.13
ECHDC1-220ENST00000528402 AP1M2Q9Y6Q5 423 aa14.26□□□□□ -0.13
ECHDC1-220ENST00000528402 PCM1Q15154 2024 aa14.26□□□□□ -0.13
ECHDC1-220ENST00000528402 MAGEB17A8MXT2 336 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 KDM1AO60341 852 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 LDLRP01130 860 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 RETP07949 1114 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 ZCCHC18P0CG32 403 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 RAP2AP10114 183 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 DDX5P17844 614 aaKnown RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 DRD1P21728 446 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 HRH2P25021 359 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 PTX3P26022 381 aaPredicted RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 BMP8BP34820 402 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 HPCAL1P37235 193 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 WASP42768 502 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 PHC1P78364 1004 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 MRPS21P82921 87 aaKnown RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 CHRNB3Q05901 458 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 C2orf27AQ580R0 203 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 PRAMEF14Q5SWL7 426 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 PRAMEF13Q5VWM6 474 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 ERICH5Q6P6B1 374 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 USP30Q70CQ3 517 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 R3HCC1LQ7Z5L2 792 aaKnown RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 AMIGO2Q86SJ2 522 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 SERPINA11Q86U17 422 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 CALHM3Q86XJ0 350 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 MICU2Q8IYU8 434 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 ST13P4Q8IZP2 240 aaPredicted RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 GALNT4Q8N4A0 578 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 MFSD2AQ8NA29 543 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 ZNF548Q8NEK5 533 aaPredicted RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 ST13P5Q8NFI4 369 aaPredicted RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 OR10A6Q8NH74 314 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 GANCQ8TET4 914 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 SMPDL3AQ92484 453 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 FAM120BQ96EK7 910 aaKnown RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 CPPED1Q9BRF8 314 aaPredicted RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 SLC17A9Q9BYT1 436 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 SEMA6AQ9H2E6 1030 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 RPF2Q9H7B2 306 aaKnown RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 SERHLQ9NQF3 203 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 SLC25A37Q9NYZ2 338 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 GMPR2Q9P2T1 348 aaKnown RBP14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 FZD4Q9ULV1 537 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 NCKAP1Q9Y2A7 1128 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 NUMA1Q14980 2115 aa14.25□□□□□ -0.13
ECHDC1-220ENST00000528402 DEAF1O75398 565 aaPredicted RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 ANXA4P09525 319 aaPredicted RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 SLC35G4P0C7Q5 338 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 MTHFD1P11586 935 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 COX7A2P14406 83 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 HOXB9P17482 250 aaPredicted RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 TACR1P25103 407 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 TIA1P31483 386 aaKnown RBP eCLIP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 CCT8P50990 548 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 YBX1P67809 324 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 HTR4Q13639 388 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 DDX39BQ13838 428 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 SELPLGQ14242 412 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 SLBPQ14493 270 aaKnown RBP eCLIP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 IRF4Q15306 451 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 AAK1Q2M2I8 961 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 THEMIS2Q5TEJ8 643 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 CAPRIN2Q6IMN6 1127 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 DOK6Q6PKX4 331 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 FAM83HQ6ZRV2 1179 aaPredicted RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 C17orf64Q86WR6 236 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 HORMAD1Q86X24 394 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 MSRB3Q8IXL7 192 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 EID3Q8N140 333 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 DTWD1Q8N5C7 304 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 NATD1Q8N6N6 113 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 CLHC1Q8NHS4 586 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 FOXJ1Q92949 421 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 COQ8BQ96D53 544 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 MTERF3Q96E29 417 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 REXO5Q96IC2 774 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 PHF12Q96QT6 1004 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 RPP25Q9BUL9 199 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 RAB11FIP5Q9BXF6 653 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 FAM192AQ9GZU8 254 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 MAGIXQ9H6Y5 334 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 OLAHQ9NV23 265 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 ATAD3AQ9NVI7 634 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 GEMIN8Q9NWZ8 242 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 NEUROG3Q9Y4Z2 214 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 PIPSLA2A3N6 862 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 SCAMP2O15127 329 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 PAK4O96013 591 aaPredicted RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 NCK1P16333 377 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 HOXD11P31277 338 aaPredicted RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 CTHP32929 405 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 GSTM5P46439 218 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 RPS13P62277 151 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 TXNL4AP83876 142 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 UGT8Q16880 541 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 TMEM259Q4ZIN3 620 aa14.24□□□□□ -0.13
ECHDC1-220ENST00000528402 CPTPQ5TA50 214 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms