RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 OCA2Q04671 838 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 TESK1Q15569 626 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 C3AR1Q16581 482 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 MUM1Q2TAK8 710 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 ACSBG2Q5FVE4 666 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 IRAK1BP1Q5VVH5 260 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 LRRC8BQ6P9F7 803 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 LANCL3Q6ZV70 420 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 PLD3Q8IV08 490 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 PPFIBP2Q8ND30 876 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 GIMAP7Q8NHV1 300 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 C1orf54Q8WWF1 131 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 LPGAT1Q92604 370 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 CCDC138Q96M89 665 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 ALS2CR12Q96Q35 445 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 TGIF2Q9GZN2 237 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 RNF32Q9H0A6 362 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 TRPC4Q9UBN4 977 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 SH3BGRL2Q9UJC5 107 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 AMFRQ9UKV5 643 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 A0A0A6YYC8 382 aaPredicted RBP13.52□□□□□ -0.25
CPSF1-201ENST00000526271 I3L1I5 382 aaPredicted RBP13.52□□□□□ -0.25
CPSF1-201ENST00000526271 MYO1CO00159 1063 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 CCL21O00585 134 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 KDM1AO60341 852 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 RPN2P04844 631 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 RPL22P35268 128 aaKnown RBP13.52□□□□□ -0.25
CPSF1-201ENST00000526271 KIR3DL1P43629 444 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 EMP3P54852 163 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 NAP1L1P55209 391 aaKnown RBP13.52□□□□□ -0.25
CPSF1-201ENST00000526271 PRAMEP78395 509 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 KCNJ11Q14654 390 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 INAQ16352 499 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 FCRLBQ6BAA4 426 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 PPP1R21Q6ZMI0 780 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 PEX26Q7Z412 305 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 VN1R4Q7Z5H5 301 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 ZNF808Q8N4W9 903 aaPredicted RBP13.52□□□□□ -0.25
CPSF1-201ENST00000526271 CSNK1A1LQ8N752 337 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 ACBD4Q8NC06 268 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 PEX13Q92968 403 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 MFSD3Q96ES6 412 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 SIGLEC12Q96PQ1 595 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 PKP4Q99569 1192 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 RAB11FIP5Q9BXF6 653 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 RAB6BQ9NRW1 208 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 SPATA7Q9P0W8 599 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 TINAGQ9UJW2 476 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 SH2B3Q9UQQ2 575 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 FAM169AQ9Y6X4 670 aa13.52□□□□□ -0.25
CPSF1-201ENST00000526271 TCRBV7S3A2A0A539 114 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 DYTNA2CJ06 578 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 PSIP1O75475 530 aaKnown RBP13.51□□□□□ -0.25
CPSF1-201ENST00000526271 IFNB1P01574 187 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 FDFT1P37268 417 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 EIF3BP55884 814 aaKnown RBP13.51□□□□□ -0.25
CPSF1-201ENST00000526271 SESN2P58004 480 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-201ENST00000526271 TYSND1Q2T9J0 566 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 PTRHD1Q6GMV3 140 aaKnown RBP13.51□□□□□ -0.25
CPSF1-201ENST00000526271 H3F3CQ6NXT2 135 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 RIPOR1Q6ZS17 1223 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 NEK10Q6ZWH5 1172 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 MDS2Q8NDY4 140 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 OR9A1PQ8NGU1 263 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 LRRC45Q96CN5 670 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 CABS1Q96KC9 395 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 MACROD1Q9BQ69 325 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 VN1R1Q9GZP7 353 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 LZTFL1Q9NQ48 299 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 SEC14L3Q9UDX4 400 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 TAC3Q9UHF0 121 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 GUCA1BQ9UMX6 200 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 ZNF835Q9Y2P0 537 aa13.51□□□□□ -0.25
CPSF1-201ENST00000526271 OR5H15A6NDH6 313 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 GOLGA6L9A6NEM1 432 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 USP27XA6NNY8 438 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 E7ENX8 843 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 HAT1O14929 419 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 PRAMEF2O60811 474 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 SEC24DO94855 1032 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-201ENST00000526271 APRTP07741 180 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 FDXRP22570 491 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 FMO4P31512 558 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 TTPAP49638 278 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 TAP2Q03519 686 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 SNX1Q13596 522 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 ZXDCQ2QGD7 858 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-201ENST00000526271 PCID2Q5JVF3 399 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 TMEM207Q6UWW9 146 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 CENPUQ71F23 418 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 OTOAQ7RTW8 1153 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 FGD2Q7Z6J4 655 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 SIAH3Q8IW03 269 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 ZNF480Q8WV37 535 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 MVB12AQ96EY5 273 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 MMABQ96EY8 250 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-201ENST00000526271 TSPAN10Q9H1Z9 355 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-201ENST00000526271 RIC8BQ9NVN3 520 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 SYBUQ9NX95 663 aa13.5□□□□□ -0.25
CPSF1-201ENST00000526271 TRMT1Q9NXH9 659 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms