RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 COG4Q9H9E3 785 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CPNE5Q9HCH3 593 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CHMP1AQ9HD42 196 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 STARD5Q9NSY2 213 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SNX13Q9Y5W8 968 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 HS3ST3A1Q9Y663 406 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRK2Q5S007 2527 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 PIKFYVEQ9Y2I7 2098 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 OR6C74A6NCV1 312 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 LMO7DNF2Z398 122 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 IFRD1O00458 451 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 RASGRF2O14827 1237 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 TM4SF5O14894 197 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 TP73O15350 636 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 TRMUO75648 421 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 MYO1DO94832 1006 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 PIK3CBP42338 1070 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SLC12A2P55011 1212 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 COPZ1P61923 177 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 POLR2GP62487 172 aaKnown RBP eCLIP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 MPP1Q00013 466 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SRSF11Q05519 484 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 CALCOCO2Q13137 446 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 PPP1R3AQ16821 1122 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 LACTB2Q53H82 288 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 BORAQ6PGQ7 559 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 PLD3Q8IV08 490 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 RASGRP3Q8IV61 690 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 PHC2Q8IXK0 858 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SRRM1Q8IYB3 904 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 FBXO39Q8N4B4 442 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SLC35B2Q8TB61 432 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM159Q96B96 161 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 EFHD2Q96C19 240 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 MAP6Q96JE9 813 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 STMN4Q9H169 189 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SAYSD1Q9NPB0 183 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ACSS2Q9NR19 701 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 HRASLS2Q9NWW9 162 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ZMIZ1Q9ULJ6 1067 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 NFS1Q9Y697 457 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 C5orf60A6NFR6 353 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 HACD1B0YJ81 288 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 IDH3BO43837 385 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 LRP3O75074 770 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM153BP0C7A2 387 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 CHN1P15882 459 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 HMGCLP35914 325 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 LEPRP48357 1165 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ARHGDIBP52566 201 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ITGA8P53708 1063 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 CDC16Q13042 620 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF460Q14592 562 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 CLCA4Q14CN2 919 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM153CQ494X1 144 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 C1orf189Q5VU69 101 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 METTL2BQ6P1Q9 378 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SUSD1Q6UWL2 747 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 PLEKHM3Q6ZWE6 761 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ADGRG6Q86SQ4 1221 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 ZFAND4Q86XD8 727 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 PALM2Q8IXS6 379 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 LCN9Q8WX39 176 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 CDKL2Q92772 493 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 VOPP1Q96AW1 172 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 METTL2AQ96IZ6 378 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 SEC22CQ9BRL7 303 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 TRIM45Q9H8W5 580 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 NDUFA13Q9P0J0 144 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 CPNE7Q9UBL6 633 aa7.65□□□□□ -1.18
LIMCH1-219ENST00000514096 AP1G1O43747 822 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 AP2A1O95782 977 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 AGR2O95994 175 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 GSTA1P08263 222 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 MTHFD1P11586 935 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF30P17039 623 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF7P17097 686 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 PPARGP37231 505 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC19A1P41440 591 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 MAGEA4P43358 317 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 OVGP1Q12889 678 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 KLF1Q13351 362 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 PGS1Q32NB8 556 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 PYCR3Q53H96 274 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 FAM199XQ6PEV8 388 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 TECPR1Q7Z6L1 1165 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 CENPSQ8N2Z9 138 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 ESAMQ96AP7 390 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 VAT1Q99536 393 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 TUBA1CQ9BQE3 449 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 BTBD2Q9BX70 525 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 ZFP57Q9NU63 452 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 TXLNGQ9NUQ3 528 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 LUZP4Q9P127 313 aa7.65□□□□□ -1.19
LIMCH1-219ENST00000514096 HELZ2Q9BYK8 2649 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-219ENST00000514096 A0A1W2PQM1 296 aa7.64□□□□□ -1.19
LIMCH1-219ENST00000514096 TCP11X1B4DZS4 312 aa7.64□□□□□ -1.19
LIMCH1-219ENST00000514096 M0QX08 132 aa7.64□□□□□ -1.19
LIMCH1-219ENST00000514096 LDB2O43679 373 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms