RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CLDN11O75508 207 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 MT-CO2P00403 227 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 USP17L7P0C7H9 530 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 GOT1P17174 413 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 SPAM1P38567 509 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 MRPS5P82675 430 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 CDK3Q00526 305 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF674Q2M3X9 581 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 FNDC3BQ53EP0 1204 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ATAT1Q5SQI0 421 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 FSTL4Q6MZW2 842 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 METTL4Q8N3J2 472 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 MS4A15Q8N5U1 240 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 OR1J4Q8NGS1 313 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ATG4CQ96DT6 458 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 YIPF4Q9BSR8 244 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ZDHHC6Q9H6R6 413 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TPT1P8Q9HAU6 139 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 HHATLQ9HCP6 504 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 GPATCH2Q9NW75 528 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 NLGN3Q9NZ94 848 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 GNG13Q9P2W3 67 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 KIF25Q9UIL4 384 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 HMX3A6NHT5 357 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 POMCP01189 267 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 CSF2P04141 144 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ETFAP13804 333 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PRKCAP17252 672 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 CMPK1P30085 196 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 THPOP40225 353 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 HERVK_113P63132 956 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 KCNC4Q03721 635 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 POU4F2Q12837 409 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 GK3PQ14409 553 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 KIAA1161Q6NSJ0 714 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TMPRSS11BQ86T26 416 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 OR6K6Q8NGW6 343 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 SMARCD2Q92925 531 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ADAD1Q96M93 576 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 OR4K3Q96R72 315 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 SPIN2AQ99865 258 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 SPIN2BQ9BPZ2 258 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TTYH2Q9BSA4 534 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 URM1Q9BTM9 101 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 EFCAB11Q9BUY7 163 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ERVK-6Q9BXR3 956 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PORCNQ9H237 461 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PCDH17O14917 1159 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 MUSKO15146 869 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 BANF1O75531 89 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PTGIRP43119 386 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 DSTNP60981 165 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 RAB8AP61006 207 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ZC3H12AQ5D1E8 599 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM205Q6UW68 189 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 C12orf40Q86WS4 652 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TICAM1Q8IUC6 712 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 MAPK15Q8TD08 544 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF419Q96HQ0 510 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 CYP2S1Q96SQ9 504 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 LGMNQ99538 433 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 DPEP2Q9H4A9 486 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TIMM22Q9Y584 194 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 DISP1Q96F81 1524 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 GLYATL1P3A0A0U1RQE8 302 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 FAM86B1E9PN63 330 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 KLRC4O43908 158 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC25A14O95258 325 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 FARS2O95363 451 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 CDK1P06493 297 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 SERPINF1P36955 418 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ART1P52961 327 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 CAPSQ13938 189 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 LRIF1Q5T3J3 769 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PDE12Q6L8Q7 609 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TMCO2Q7Z6W1 182 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PIGZQ86VD9 579 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 FAM86B1Q8N7N1 296 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 MYLIPQ8WY64 445 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 TAAR8Q969N4 342 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 AK9Q5TCS8 1911 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 OVOS2A0A0J9YW53 1432 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 OVOS2Q6IE36 1432 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ARHGEF5Q12774 1597 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CLIC1O00299 241 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CACNB4O00305 520 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TREHO43280 583 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 RGS9O75916 674 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 RASAL1O95294 804 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 FOXN2P32314 431 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CDKN2BP42772 138 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TAF1CQ15572 869 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 UGT8Q16880 541 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SPIN3Q5JUX0 258 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 MBOAT1Q6ZNC8 495 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 IDO2Q6ZQW0 420 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 FOXRED2Q8IWF2 684 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 LRRC57Q8N9N7 239 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ELP5Q8TE02 316 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SENP8Q96LD8 212 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms