RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CRISPLD1Q9H336 500 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 EIF2B3Q9NR50 452 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 GSN-AS1Q9NRJ2 163 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 CUEDC1Q9NWM3 386 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 CTSFQ9UBX1 484 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 IKZF3Q9UKT9 509 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A0G2JPF8 293 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 SH3D21A4FU49 640 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 ISM1B1AKI9 464 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 HNRNPCL3B7ZW38 293 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 GTPBP1O00178 669 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 ARVCFO00192 962 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 MUSKO15146 869 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 TO15178 435 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 SEC22BO75396 215 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF682O95780 498 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 SERPINA1P01009 418 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 RNF224P0DH78 156 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 HNRNPCL4P0DMR1 293 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 HSF2Q03933 536 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 LRRC32Q14392 662 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 TIMM50Q3ZCQ8 353 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 PAN2Q504Q3 1202 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 PAN3Q58A45 887 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 RUNDC3AQ59EK9 446 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 PCID2Q5JVF3 399 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 B3GNT9Q6UX72 402 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 MOB2Q70IA6 237 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 PDXPQ96GD0 296 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF419Q96HQ0 510 aaPredicted RBP11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 EXOC2Q96KP1 924 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 LHX5Q9H2C1 402 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 ZFP64Q9NPA5 681 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 NCKAP1Q9Y2A7 1128 aa11.71□□□□□ -0.54
LIMCH1-213ENST00000511496 M0R129 80 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 M0R233 179 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CXCR6O00574 342 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 LYRM1O43325 122 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 AP2A2O94973 939 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 LHCGRP22888 699 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 UNC50Q53HI1 259 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 BCL2L15Q5TBC7 163 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 TTC16Q8NEE8 873 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 COQ8AQ8NI60 647 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 KCNC2Q96PR1 638 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CCM2Q9BSQ5 444 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CD244Q9BZW8 370 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 PIGUQ9H490 435 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 SPASTQ9UBP0 616 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 NDRG4Q9ULP0 352 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 KRBOX1C9JBD0 128 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 E2F3O00716 465 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 TREHO43280 583 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 RGS11O94810 467 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 TSPAN12O95859 305 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 HLA-FP30511 346 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 GMPSP49915 693 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 VSX2P58304 361 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 USP39Q53GS9 565 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF678Q5SXM1 525 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CPZQ66K79 652 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 PKN3Q6P5Z2 889 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 KDELC2Q7Z4H8 507 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 FAM124AQ86V42 546 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 PHYKPLQ8IUZ5 450 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 ZDHHC21Q8IVQ6 265 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 Q8N402 240 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 DCBLD1Q8N8Z6 715 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF285Q96NJ3 590 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 RPRD1AQ96P16 312 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 NIT2Q9NQR4 276 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 PSORS1C1Q9UIG5 152 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 KLK4Q9Y5K2 254 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 COMMD10Q9Y6G5 202 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 DNASE2O00115 360 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CHP2O43745 196 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 AKAP8O43823 692 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CDRT1O95170 752 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 GDF11O95390 407 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 CYP17A1P05093 508 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 RD3LP0DJH9 198 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC2A4P14672 509 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 ARL4AP40617 200 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 COQ5Q5HYK3 327 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 PYHIN1Q6K0P9 492 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 C5orf46Q6UWT4 87 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 ATAD1Q8NBU5 361 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 C2CD4CQ8TF44 421 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 COL21A1Q96P44 957 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 KCTD15Q96SI1 283 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC29A3Q9BZD2 475 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 SDHAF3Q9NRP4 125 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 RAD18Q9NS91 495 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC22A11Q9NSA0 550 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 ANKEF1Q9NU02 776 aa11.7□□□□□ -0.54
LIMCH1-213ENST00000511496 A0A1B0GTL3 188 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SOCS7O14512 581 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PDCD5O14737 125 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 FGL2Q14314 439 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 GLYR1Q49A26 553 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms