RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 RASGEF1AQ8N9B8 481 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 BTN2A2Q8WVV5 523 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 MAGED4Q96JG8 741 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 AARSD1Q9BTE6 412 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ADI1Q9BV57 179 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 C1QTNF7Q9BXJ2 289 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SYNDIG1Q9H7V2 258 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 MRM3Q9HC36 420 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PLAGL1Q9UM63 463 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 TIMM22Q9Y584 194 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SNX8Q9Y5X2 465 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 LOC100506127A0A0U1RQW1 187 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 LRRC14BA6NHZ5 514 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 HNRNPCL2B2RXH8 293 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 H3BNH8 94 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 H3BUI4 141 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 UBXN8O00124 270 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NR5A2O00482 541 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 GAPDHSO14556 408 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 FFAR2O15552 330 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 POP7O75817 140 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SUPT7LO94864 414 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 APBB3O95704 486 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SLC35E2BP0CK96 405 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 DBTP11182 482 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 MTHFD1P11586 935 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 BCKDHBP21953 392 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 IDUAP35475 653 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CSNK1EP49674 416 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CLK1P49759 484 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ABCE1P61221 599 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ZXDAP98168 799 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CTSL3PQ5NE16 218 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 BROXQ5VW32 411 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 STK32CQ86UX6 486 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 UBALD2Q8IYN6 164 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 FSTL5Q8N475 847 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 C7orf57Q8NEG2 295 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PIGKQ92643 395 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PYCR2Q96C36 320 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 MED8Q96G25 268 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 C7orf26Q96N11 449 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SLC6A18Q96N87 628 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 FERD3LQ96RJ6 166 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NELL2Q99435 816 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 GPR22Q99680 433 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 C1orf50Q9BV19 199 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ATG10Q9H0Y0 220 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SMOXQ9NWM0 555 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SIRPGQ9P1W8 387 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CLDN25C9JDP6 229 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ICMTO60725 284 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SIX3O95343 332 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 APOA4P06727 396 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CTSEP14091 401 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 TSHRP16473 764 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ZNF8P17098 575 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 OGNP20774 298 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 MATN1P21941 496 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PDHA2P29803 388 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CD6P30203 668 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 LEPRP48357 1165 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 HSPA13P48723 471 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 RGS4P49798 205 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NFATC3Q12968 1075 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 C18orf21Q32NC0 220 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ZBED5Q49AG3 693 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 USP39Q53GS9 565 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CEP78Q5JTW2 689 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ATAD3BQ5T9A4 648 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 AGAP9Q5VTM2 703 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PNCKQ6P2M8 343 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CYP20A1Q6UW02 462 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SYT13Q7L8C5 426 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 C11orf74Q86VG3 221 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ZNF761Q86XN6 746 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PHACTR4Q8IZ21 702 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 OR8H2Q8N162 312 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 DHRSXQ8N5I4 330 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 DNAJB14Q8TBM8 379 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ZFP90Q8TF47 636 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 RAB7BQ96AH8 199 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 RNF145Q96MT1 663 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SLX1AQ9BQ83 275 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 HDAC8Q9BY41 377 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 TRIT1Q9H3H1 467 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ZNF696Q9H7X3 374 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NEK6Q9HC98 313 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 HMG20AQ9NP66 347 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 RPRD1BQ9NQG5 326 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NCKIPSDQ9NZQ3 722 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ITGB1BP2Q9UKP3 347 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 TMPRSS11EQ9UL52 423 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 VPS9D1Q9Y2B5 631 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ANGPTL3Q9Y5C1 460 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NPC1O15118 1278 aa8.41□□□□□ -1.06
LIMCH1-209ENST00000509277 DENRO43583 198 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-209ENST00000509277 GLRA3O75311 464 aa8.41□□□□□ -1.06
LIMCH1-209ENST00000509277 KATNA1O75449 491 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms