RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CCDC158Q5M9N0 1113 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 UGT3A1Q6NUS8 523 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 FUT10Q6P4F1 479 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 BTNL8Q6UX41 500 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 MEX3BQ6ZN04 569 aaKnown RBP3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 CUZD1Q86UP6 607 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 NUP93Q8N1F7 819 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 NIPA2Q8N8Q9 360 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 FIBINQ8TAL6 211 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 GRK7Q8WTQ7 553 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 METTL21AQ8WXB1 218 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 CENPTQ96BT3 561 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 SGF29Q96ES7 293 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 C4orf45Q96LM5 186 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 NDNQ99608 321 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 LSG1Q9H089 658 aaKnown RBP3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 TUFT1Q9NNX1 390 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 ABCB8Q9NUT2 735 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR6C2Q9NZP2 312 aa3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 RUVBL2Q9Y230 463 aaKnown RBP3.64□□□□□ -1.83
HMGB1P28-201ENST00000507778 SDR42E2A6NKP2 422 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 C17orf105B2RV13 164 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 ERVV-2B6SEH9 535 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 C2CD4DB7Z1M9 353 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 KBTBD13C9JR72 458 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF263O14978 683 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 EXTL3O43909 919 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 NADKO95544 446 aaPredicted RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 GPIP06744 558 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 CD48P09326 243 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 FAM157CP0CG43 387 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 ITIH1P19827 911 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 ALDH1B1P30837 517 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 CHRNB4P30926 498 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 MAP2K2P36507 400 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 GLIPR1P48060 266 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 NPBWR1P48145 328 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 MYL7Q01449 175 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 TEAD2Q15562 447 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 GPR33Q49SQ1 333 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 TTC27Q6P3X3 843 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 IYDQ6PHW0 289 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 CCDC170Q8IYT3 715 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 RCOR2Q8IZ40 523 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 SYCP3Q8IZU3 236 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 KLHDC1Q8N7A1 406 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR7G3Q8NG95 312 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR7A2PQ8NGA2 310 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 UBLCP1Q8WVY7 318 aaPredicted RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 DYRK2Q92630 601 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 TEKT1Q969V4 418 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 PGLYRP2Q96PD5 576 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 F2RL3Q96RI0 385 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 CDCA3Q99618 268 aaPredicted RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 HNRNPABQ99729 332 aaKnown RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 FUT8Q9BYC5 575 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 MMADHCQ9H3L0 296 aaPredicted RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 RNF121Q9H920 327 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 PHPT1Q9NRX4 125 aaPredicted RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 INTS10Q9NVR2 710 aaKnown RBP3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 GMEB2Q9UKD1 530 aa3.63□□□□□ -1.83
HMGB1P28-201ENST00000507778 TRBV5-5A0A0J9YX44 114 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRSS46E5RG02 174 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 CCL24O00175 119 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC33A1O00400 549 aaPredicted RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 CDC123O75794 336 aaPredicted RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 AP2A2O94973 939 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 BAG3O95817 575 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 PAK4O96013 591 aaPredicted RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 SP1P08047 785 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 HMBSP08397 361 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 F3P13726 295 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 ITGB6P18564 788 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 CCND3P30281 292 aaPredicted RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 SSTR1P30872 391 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 DNA2P51530 1060 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 ST8SIA6P61647 398 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 FOLH1Q04609 750 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 RBM39Q14498 530 aaKnown RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 CCDC6Q16204 474 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 KLHL22Q53GT1 634 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 ODF2Q5BJF6 829 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 C9orf50Q5SZB4 431 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 FAM46CQ5VWP2 391 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 FAM53AQ6NSI3 398 aaPredicted RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF790Q6PG37 636 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 TMEM207Q6UWW9 146 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 ANKRD46Q86W74 232 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 MEX3DQ86XN8 651 aaKnown RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 CREBRFQ8IUR6 639 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 CROCCP3Q8IVE0 287 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 DBF4BQ8NFT6 615 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR2T11Q8NH01 316 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 DNASE2BQ8WZ79 361 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 PIK3R3Q92569 461 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 FBXO17Q96EF6 278 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 KLHL5Q96PQ7 755 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 BTBD9Q96Q07 612 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 THAP2Q9H0W7 228 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms