RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 BNC2Q6ZN30 1099 aaPredicted RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 SLCO4C1Q6ZQN7 724 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 PACS2Q86VP3 889 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 NRROSQ86YC3 692 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 TBC1D21Q8IYX1 336 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 PRSS33Q8NF86 280 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 WDR20Q8TBZ3 569 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 WDR60Q8WVS4 1066 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 NEIL2Q969S2 332 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 MENTQ9BUN1 341 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 TRIT1Q9H3H1 467 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 EHD1Q9H4M9 534 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 ACTL8Q9H568 366 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 C1orf109Q9NX04 203 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 SPATA7Q9P0W8 599 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 WDR37Q9Y2I8 494 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 SNX11Q9Y5W9 270 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 PDZK1P1A8MUH7 402 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 SLC22A3O75751 556 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 CFIP05156 583 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 IDSP22304 550 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 HOXD12P35452 270 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 UFM1P61960 85 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 TCF15Q12870 199 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 ILF3Q12906 894 aaKnown RBP eCLIP13.69□□□□□ -0.22
CUX1-209ENST00000487284 KPNB1Q14974 876 aaKnown RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 KIAA0040Q15053 153 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 CYP2A13Q16696 494 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 IL23RQ5VWK5 629 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 C8orf82Q6P1X6 216 aaPredicted RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 LCTLQ6UWM7 567 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 RETREG3Q86VR2 466 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 PROKR1Q8TCW9 393 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 GPBAR1Q8TDU6 330 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 SETD7Q8WTS6 366 aaKnown RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 ROPN1LQ96C74 230 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 MTFMTQ96DP5 389 aaKnown RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 TEX37Q96LM6 180 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 INSM2Q96T92 566 aaPredicted RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 FSCN3Q9NQT6 498 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 PRDM8Q9NQV8 689 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 TBC1D29Q9UFV1 150 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 EIF3LQ9Y262 564 aaKnown RBP13.69□□□□□ -0.22
CUX1-209ENST00000487284 NDUFAF1Q9Y375 327 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 DYRK1BQ9Y463 629 aa13.69□□□□□ -0.22
CUX1-209ENST00000487284 CABIN1Q9Y6J0 2220 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 MUC6Q6W4X9 2439 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 PCDH15Q96QU1 1955 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 FAM234BA2RU67 622 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 ANGPT2O15123 496 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 ENTPD5O75356 428 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 SEC22BO75396 215 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 EPN2O95208 641 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 EML2O95834 649 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 G6PDP11413 515 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 HSD3B1P14060 373 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 JAK1P23458 1154 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 HSD3B2P26439 372 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 DPP6P42658 865 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 NEK2P51955 445 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 KCNK10P57789 538 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 DUOXA1Q1HG43 343 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 C6orf163Q5TEZ5 329 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 PRAMEF13Q5VWM6 474 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 ATG9BQ674R7 924 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 DUS1LQ6P1R4 473 aaKnown RBP13.68□□□□□ -0.22
CUX1-209ENST00000487284 TMPRSS11BQ86T26 416 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 FBXW8Q8N3Y1 598 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 PCYOX1LQ8NBM8 494 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 SPDL1Q96EA4 605 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 CMTM7Q96FZ5 175 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 SLC45A3Q96JT2 553 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 C12orf66Q96MD2 445 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 IL17FQ96PD4 163 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 SERPINI1Q99574 410 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 EFCAB11Q9BUY7 163 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 GSDMCQ9BYG8 508 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 SH2B3Q9UQQ2 575 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 TDRKHQ9Y2W6 561 aaKnown RBP13.68□□□□□ -0.22
CUX1-209ENST00000487284 PCDHGA7Q9Y5G6 932 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 PCDHGA11Q9Y5H2 935 aa13.68□□□□□ -0.22
CUX1-209ENST00000487284 CFAP20Q9Y6A4 193 aaKnown RBP13.68□□□□□ -0.22
CUX1-209ENST00000487284 A0A1W2PP18 115 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 DYTNA2CJ06 578 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 ASPDHA6ND91 283 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 ZNF839A8K0R7 811 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 C9JVG2 144 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 SDC3O75056 442 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 PDE5AO76074 875 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 C1GALT1C1LP0DN25 315 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 ACPPP15309 386 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 PCSK2P16519 638 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 IL12AP29459 219 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 MPLP40238 635 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 POLR2JP52435 117 aaKnown RBP13.67□□□□□ -0.22
CUX1-209ENST00000487284 ACTR3P61158 418 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 PSME3P61289 254 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 HNRNPKP61978 463 aaKnown RBP eCLIP13.67□□□□□ -0.22
CUX1-209ENST00000487284 PRKG2Q13237 762 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms