RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 FAM20CQ8IXL6 584 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 PALM2Q8IXS6 379 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 ARHGEF39Q8N4T4 335 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 TTC29Q8NA56 475 aaPredicted RBP6.69□□□□□ -1.34
VPS50-218ENST00000485994 FAM45AQ8TCE6 357 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 TM4SF19Q96DZ7 209 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 VPS50Q96JG6 964 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 CAPZA3Q96KX2 299 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 SELENOSQ9BQE4 189 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 WDR83Q9BRX9 315 aaKnown RBP6.69□□□□□ -1.34
VPS50-218ENST00000485994 SGPP1Q9BX95 441 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 TRIM54Q9BYV2 358 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 TGIF2Q9GZN2 237 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 ZNF304Q9HCX3 659 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 ACSS2Q9NR19 701 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 NDOR1Q9UHB4 597 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 GPN3Q9UHW5 284 aaPredicted RBP6.69□□□□□ -1.34
VPS50-218ENST00000485994 TRMT6Q9UJA5 497 aaKnown RBP6.69□□□□□ -1.34
VPS50-218ENST00000485994 CDC14AQ9UNH5 594 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 RUVBL2Q9Y230 463 aaKnown RBP6.69□□□□□ -1.34
VPS50-218ENST00000485994 PDE10AQ9Y233 779 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 TP53TG5Q9Y2B4 290 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 KLHL20Q9Y2M5 609 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 ZNF451Q9Y4E5 1061 aa6.69□□□□□ -1.34
VPS50-218ENST00000485994 FLNCQ14315 2725 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 LOC105369274A0A096LPK9 316 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 LOC102723532A0A0G2JNH3 316 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 A0A1W2PQ72 361 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 H0YGG7 62 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 AGPSO00116 658 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 PRPF4O43172 522 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS50-218ENST00000485994 BANF1O75531 89 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 UMODP07911 640 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 CYC1P08574 325 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ENO2P09104 434 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 HIST1H2AGP0C0S8 130 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 NPPBP16860 134 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 HIST1H2ADP20671 130 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 FDXRP22570 491 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 MCM3P25205 808 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 VARSP26640 1264 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 PSMB5P28074 263 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 SLC26A3P40879 764 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 FOLR3P41439 243 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 RPL21P46778 160 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 CD97P48960 835 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 CCL11P51671 97 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 CDKN2DP55273 166 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 VSX2P58304 361 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 ARF3P61204 181 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 RPS15AP62244 130 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 YBX1P67809 324 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 CDKL1Q00532 357 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 PDIA2Q13087 525 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 CALCOCO2Q13137 446 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 CUL1Q13616 776 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 SLC9A5Q14940 896 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 NKG7Q16617 165 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 DEFB110Q30KQ9 67 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 CDKL4Q5MAI5 379 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 DCAF10Q5QP82 559 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 HECTD2Q5U5R9 776 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ATG9BQ674R7 924 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 TRMT10BQ6PF06 316 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 LCTLQ6UWM7 567 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ASB18Q6ZVZ8 466 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ZC3HC1Q86WB0 502 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 CPNE9Q8IYJ1 553 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 OR4N4Q8N0Y3 316 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 MYO1HQ8N1T3 1032 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 NKAPQ8N5F7 415 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 TEX19Q8NA77 164 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 FBXO36Q8NEA4 188 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ABHD11Q8NFV4 315 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 OR4K1Q8NGD4 311 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 OR56A3Q8NH54 315 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ATL1Q8WXF7 558 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 FAM136AQ96C01 138 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 HIST1H2AHQ96KK5 128 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 KRT12Q99456 494 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 HIST1H2AJQ99878 128 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 TRIM51Q9BSJ1 452 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 HAUS8Q9BT25 410 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 H2AFJQ9BTM1 129 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 SLC25A23Q9BV35 468 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 TRIM55Q9BYV6 548 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 POPDC3Q9HBV1 291 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 SLC6A20Q9NP91 592 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ZNF71Q9NQZ8 489 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 SEMA3GQ9NS98 782 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 ZFATQ9P243 1243 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 STOX2Q9P2F5 926 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 CIDEBQ9UHD4 219 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 G3BP2Q9UN86 482 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 SNX24Q9Y343 169 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 PTRH2Q9Y3E5 179 aaKnown RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 NUP210LQ5VU65 1888 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 SHANK1Q9Y566 2161 aa6.68□□□□□ -1.34
VPS50-218ENST00000485994 UBR5O95071 2799 aaPredicted RBP6.68□□□□□ -1.34
VPS50-218ENST00000485994 TENM4Q6N022 2769 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms