RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DNA2P51530 1060 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 VAMP7P51809 220 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 POLR2LP62875 67 aaKnown RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 KLC1Q07866 573 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 RIGQ13278 110 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 CDH18Q13634 790 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 IL11RAQ14626 422 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 TMEM132DQ14C87 1099 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 MTHFSDQ2M296 383 aaKnown RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 SPATA1Q5VX52 437 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 C17orf47Q8NEP4 570 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 TSPAN14Q8NG11 270 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 OR2L2Q8NH16 312 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 TEKT4Q8WW24 435 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 CNRIP1Q96F85 164 aaPredicted RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 ATXN7L3BQ96GX2 97 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 CCDC106Q9BWC9 280 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 TDRD1Q9BXT4 1180 aaKnown RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 ZMYND12Q9H0C1 365 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 NOL11Q9H8H0 719 aaKnown RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 ANKZF1Q9H8Y5 726 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 PANK3Q9H999 370 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 CNOT10Q9H9A5 744 aaKnown RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 GNB4Q9HAV0 340 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 CHST11Q9NPF2 352 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 NDE1Q9NXR1 346 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 SLC24A2Q9UI40 661 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 RPS6KA6Q9UK32 745 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 CHKBQ9Y259 395 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 MAGED1Q9Y5V3 778 aaPredicted RBP3.17□□□□□ -1.9
VPS41-213ENST00000485955 TOP2BQ02880 1626 aa3.17□□□□□ -1.9
VPS41-213ENST00000485955 hCG_1809904A0A1W2PP81 198 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 A0A1W2PPE2 198 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 A0A1W2PR64 198 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 CASTOR2A6NHX0 329 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 H0YAE9 185 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 ERAL1O75616 437 aaKnown RBP3.16□□□□□ -1.9
VPS41-213ENST00000485955 ACSL3O95573 720 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 AZU1P20160 251 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 CD22P20273 847 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 ALDH1B1P30837 517 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 LHX1P48742 406 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 LIG4P49917 911 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 UBXN2AP68543 259 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 PTPN14Q15678 1187 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 VWC2Q2TAL6 325 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 BMP2KLQ5H9B9 411 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 WDR78Q5VTH9 848 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 GARNL3Q5VVW2 1013 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 GDPGP1Q6ZNW5 385 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 CAMKMTQ7Z624 323 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 FBXL16Q8N461 479 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 ATL1Q8WXF7 558 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 LINC00615Q96LM1 132 aaPredicted RBP3.16□□□□□ -1.9
VPS41-213ENST00000485955 C2orf48Q96LS8 159 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 FEVQ99581 238 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 OVOL2Q9BRP0 275 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 SLC2A11Q9BYW1 496 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 MTMR12Q9C0I1 747 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 CCDC68Q9H2F9 335 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 B3GAT2Q9NPZ5 323 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 PRR34Q9NV39 138 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 FAM120CQ9NX05 1096 aaKnown RBP3.16□□□□□ -1.9
VPS41-213ENST00000485955 SNX8Q9Y5X2 465 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 PRDM2Q13029 1718 aa3.16□□□□□ -1.9
VPS41-213ENST00000485955 TOPBP1Q92547 1522 aa3.15□□□□□ -1.9
VPS41-213ENST00000485955 LOC105371242A0A075B767 164 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 TRBV4-1A0A0J9YWV2 114 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 ASB14A6NK59 587 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 SHISA7A6NL88 538 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 NPIPB9F8W1W9 429 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 CCL24O00175 119 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 O00370 1275 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 PDHA2P29803 388 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 OR3A2P47893 321 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 ALDH3A2P51648 485 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 LIMK2P53671 638 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 HSPA2P54652 639 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 MYL7Q01449 175 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 CD300CQ08708 224 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 CUL3Q13618 768 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 TAB1Q15750 504 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 NDUFAF2Q8N183 169 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 LRRC15Q8TF66 581 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 PDLIM5Q96HC4 596 aaKnown RBP3.15□□□□□ -1.91
VPS41-213ENST00000485955 SLC45A3Q96JT2 553 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 ZNF577Q9BSK1 485 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 HOXD1Q9GZZ0 328 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 CDH20Q9HBT6 801 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 CPSF2Q9P2I0 782 aaKnown RBP3.15□□□□□ -1.91
VPS41-213ENST00000485955 THAP10Q9P2Z0 257 aaPredicted RBP3.15□□□□□ -1.91
VPS41-213ENST00000485955 IL17BQ9UHF5 180 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 ANAPC2Q9UJX6 822 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 GON4LQ3T8J9 2241 aa3.15□□□□□ -1.91
VPS41-213ENST00000485955 G3V2L1 256 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CEACAM4O75871 244 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 ATP1B1P05026 303 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CSN3P07498 182 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 THEGLP0DJG4 465 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 PTGER3P43115 390 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms