RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 CYS1Q717R9 158 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 CSNK1A1LQ8N752 337 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 OLFM1Q99784 485 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 TRIM31Q9BZY9 425 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 PPANQ9NQ55 473 aaKnown RBP22.33■■□□□ 1.17
C9orf3-215ENST00000478473 SEMA3GQ9NS98 782 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 CUEDC1Q9NWM3 386 aaPredicted RBP22.33■■□□□ 1.17
C9orf3-215ENST00000478473 GPR83Q9NYM4 423 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 CTSFQ9UBX1 484 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 G3BP2Q9UN86 482 aaKnown RBP22.33■■□□□ 1.17
C9orf3-215ENST00000478473 CDC14AQ9UNH5 594 aa22.33■■□□□ 1.17
C9orf3-215ENST00000478473 RUVBL1Q9Y265 456 aaKnown RBP22.33■■□□□ 1.17
C9orf3-215ENST00000478473 FLNBO75369 2602 aaKnown RBP22.33■■□□□ 1.16
C9orf3-215ENST00000478473 NBASA2RRP1 2371 aa22.33■■□□□ 1.16
C9orf3-215ENST00000478473 MDC1Q14676 2089 aaKnown RBP22.32■■□□□ 1.16
C9orf3-215ENST00000478473 EIF3HO15372 352 aaKnown RBP eCLIP22.32■■□□□ 1.16
C9orf3-215ENST00000478473 KLHL41O60662 606 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 CD97P48960 835 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 TBPL1P62380 186 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 PDAP1Q13442 181 aaKnown RBP22.32■■□□□ 1.16
C9orf3-215ENST00000478473 FAM53BQ14153 422 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 MYBPC3Q14896 1274 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 PHKG1Q16816 387 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 ZXDCQ2QGD7 858 aaPredicted RBP22.32■■□□□ 1.16
C9orf3-215ENST00000478473 DUPD1Q68J44 220 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 ZNF572Q7Z3I7 529 aaPredicted RBP22.32■■□□□ 1.16
C9orf3-215ENST00000478473 ZC3HC1Q86WB0 502 aaKnown RBP22.32■■□□□ 1.16
C9orf3-215ENST00000478473 PALM2Q8IXS6 379 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 DTWD1Q8N5C7 304 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 THAP11Q96EK4 314 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 PHACTR1Q9C0D0 580 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 ZFATQ9P243 1243 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 PSAT1Q9Y617 370 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 HS3ST3B1Q9Y662 390 aa22.32■■□□□ 1.16
C9orf3-215ENST00000478473 A0A1W2PQ72 361 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 H7BY64 318 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 SOCS6O14544 535 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 SORBS2O94875 1100 aaKnown RBP22.31■■□□□ 1.16
C9orf3-215ENST00000478473 EIF2S1P05198 315 aaKnown RBP22.31■■□□□ 1.16
C9orf3-215ENST00000478473 ENO2P09104 434 aaPredicted RBP22.31■■□□□ 1.16
C9orf3-215ENST00000478473 SLC26A3P40879 764 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 DSG2Q14126 1118 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 VWA5B1Q5TIE3 1220 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 PRAMEF13Q5VWM6 474 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 LCTLQ6UWM7 567 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 IGFL3Q6UXB1 125 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 ANKMY2Q8IV38 441 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 CLEC1AQ8NC01 280 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 OR56A3Q8NH54 315 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 STT3BQ8TCJ2 826 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 MIB2Q96AX9 1013 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 PRAP1Q96NZ9 151 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 SARGQ9BW04 601 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 NSMCE4AQ9NXX6 385 aa22.31■■□□□ 1.16
C9orf3-215ENST00000478473 ZNF282Q9UDV7 671 aaPredicted RBP22.31■■□□□ 1.16
C9orf3-215ENST00000478473 NOVA2Q9UNW9 492 aaKnown RBP22.31■■□□□ 1.16
C9orf3-215ENST00000478473 SPENQ96T58 3664 aaKnown RBP22.3■■□□□ 1.16
C9orf3-215ENST00000478473 TNRC6AQ8NDV7 1962 aaKnown RBP22.3■■□□□ 1.16
C9orf3-215ENST00000478473 NUP210LQ5VU65 1888 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 HAT1O14929 419 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 RAD51CO43502 376 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 DPM1O60762 260 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 ZNF37AP17032 561 aaPredicted RBP22.3■■□□□ 1.16
C9orf3-215ENST00000478473 CSNK1G2P78368 415 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 TSTA3Q13630 321 aaPredicted RBP22.3■■□□□ 1.16
C9orf3-215ENST00000478473 HKDC1Q2TB90 917 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 THEMIS2Q5TEJ8 643 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 KIRREL2Q6UWL6 708 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 GALNT16Q8N428 558 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 GPATCH11Q8N954 259 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 RERGQ96A58 199 aaPredicted RBP22.3■■□□□ 1.16
C9orf3-215ENST00000478473 FAM129AQ9BZQ8 928 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 TGIF2Q9GZN2 237 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 ATP13A2Q9NQ11 1180 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 GRHL1Q9NZI5 618 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 MAU2Q9Y6X3 613 aa22.3■■□□□ 1.16
C9orf3-215ENST00000478473 PRPF4O43172 522 aaKnown RBP eCLIP22.29■■□□□ 1.162e-7■■■■□ 25.5
C9orf3-215ENST00000478473 FOXS1O43638 330 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 HIST1H2AGP0C0S8 130 aaPredicted RBP22.29■■□□□ 1.16
C9orf3-215ENST00000478473 ZGLP1P0C6A0 271 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 NPPBP16860 134 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 HIST1H2ADP20671 130 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 CASQ1P31415 396 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 RPS15AP62244 130 aaKnown RBP22.29■■□□□ 1.16
C9orf3-215ENST00000478473 AIMP2Q13155 320 aaKnown RBP22.29■■□□□ 1.16
C9orf3-215ENST00000478473 SBSNQ6UWP8 590 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 TMEM207Q6UWW9 146 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 VN1R4Q7Z5H5 301 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 ZBED8Q8IZ13 594 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 ABHD11Q8NFV4 315 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 COL26A1Q96A83 441 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 FBXL8Q96CD0 374 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 TM4SF19Q96DZ7 209 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 CABS1Q96KC9 395 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 HIST1H2AHQ96KK5 128 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 HIST1H2AJQ99878 128 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 H2AFJQ9BTM1 129 aa22.29■■□□□ 1.16
C9orf3-215ENST00000478473 ZNF552Q9H707 407 aaPredicted RBP22.29■■□□□ 1.16
C9orf3-215ENST00000478473 FLNCQ14315 2725 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 P2RX6O15547 441 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms