RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SLX1AQ9BQ83 275 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LZTFL1Q9NQ48 299 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 AGPAT4Q9NRZ5 378 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAP10Q9P2G4 905 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 VPS9D1Q9Y2B5 631 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 DHRS7Q9Y394 339 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ABCA12Q86UK0 2595 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 IGHV1-45A0A0A0MS14 117 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SDR42E2A6NKP2 422 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 IDSB3KWA1 339 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PCDH17O14917 1159 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PFDN6O15212 129 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CEP104O60308 925 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 USP1O94782 785 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EIF2S1P05198 315 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PRR35P0CG20 571 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MPC1LP0DKB6 136 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EDN3P14138 238 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ACPPP15309 386 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EZRP15311 586 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CXCR5P32302 372 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 DCTP40126 519 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ABATP80404 500 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GPS1Q13098 491 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TRIP13Q15645 432 aaPredicted RBP11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CYP1B1Q16678 543 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 DENND6AQ8IWF6 608 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 LRRC8AQ8IWT6 810 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 KCNJ9Q92806 393 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SIGLEC10Q96LC7 697 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 IMMP1LQ96LU5 166 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZNF160Q9HCG1 818 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FAM114A2Q9NRY5 505 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TAC3Q9UHF0 121 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CDC14AQ9UNH5 594 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MRPS2Q9Y399 296 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 APCP25054 2843 aa11.64□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 KCNE1BA0A087WTH5 132 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MAP2K7O14733 419 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 P2RX6O15547 441 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 NRDCO43847 1150 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 VPS26AO75436 327 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 KRT14P02533 472 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CATP04040 527 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SERPINA7P05543 415 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 F7P08709 466 aaPredicted RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 STSP08842 583 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CCDC175P0C221 793 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PAMP19021 973 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FBLP22087 321 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FDXRP22570 491 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RPA3P35244 121 aaPredicted RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TNFSF10P50591 281 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TDGF1P3P51864 188 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EMP2P54851 167 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SARNPP82979 210 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CCZ1BP86790 482 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CCZ1P86791 482 aaPredicted RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CTBP1Q13363 440 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 DHX34Q14147 1143 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PCOLCEQ15113 449 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZNF787Q6DD87 383 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RIPOR1Q6ZS17 1223 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZC3H7AQ8IWR0 971 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 KBTBD2Q8IY47 623 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PRSS58Q8IYP2 241 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 OTUD6BQ8N6M0 293 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CSNK1A1LQ8N752 337 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 AMER2Q8N7J2 671 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PPFIBP2Q8ND30 876 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CD200R1Q8TD46 325 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CABS1Q96KC9 395 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SERPINB12Q96P63 405 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TAAR6Q96RI8 345 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZNF700Q9H0M5 742 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EPS8L2Q9H6S3 715 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 XAB2Q9HCS7 855 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MKKSQ9NPJ1 570 aaPredicted RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 C14orf105Q9NVL8 296 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TRPC4Q9UBN4 977 aa11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TSR3Q9UJK0 312 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 NSG1A0A0A6YYJ2 146 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZNF839A8K0R7 811 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 E5RI56 91 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EIF3FO00303 357 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TXNDC9O14530 226 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 HAT1O14929 419 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PRPF4O43172 522 aaKnown RBP eCLIP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CCNDBP1O95273 360 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 BMP10O95393 424 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ENO3P13929 434 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 IMPA1P29218 277 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SLC1A2P43004 574 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CDC16Q13042 620 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ELOAQ14241 798 aaKnown RBP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 IRAK1BP1Q5VVH5 260 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZNF470Q6ECI4 717 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 LINC00696Q6ZRV3 163 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 VN1R4Q7Z5H5 301 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TICAM1Q8IUC6 712 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms