RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NMRAL1Q9HBL8 299 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 INTS7Q9NVH2 962 aaKnown RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 STOX2Q9P2F5 926 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 IKZF3Q9UKT9 509 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 FARSAQ9Y285 508 aaKnown RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 A0A096LPK6 155 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 CYSRT1A8MQ03 144 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 TRIM49D1C9J1S8 452 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 E7ENX8 843 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 GUCA1CO95843 209 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 C2P06681 752 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 LTA4HP09960 611 aaKnown RBP17■□□□□ 0.31
COL7A1-205ENST00000465238 CD1DP15813 335 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 IMPA1P29218 277 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 RPS18P62269 152 aaKnown RBP17■□□□□ 0.31
COL7A1-205ENST00000465238 TAP2Q03519 686 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 GPS2Q13227 327 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 UBAP2LQ14157 1087 aaKnown RBP17■□□□□ 0.31
COL7A1-205ENST00000465238 TSNQ15631 228 aaKnown RBP17■□□□□ 0.31
COL7A1-205ENST00000465238 THEMIS2Q5TEJ8 643 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 ADGRD1Q6QNK2 874 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 AGTRAPQ6RW13 159 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 SUSD1Q6UWL2 747 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 SBSNQ6UWP8 590 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 MBOAT1Q6ZNC8 495 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 CNPY4Q8N129 248 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 MIPEPQ99797 713 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 ACAT2Q9BWD1 397 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 VPS11Q9H270 941 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 ABCF3Q9NUQ8 709 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 RAB21Q9UL25 225 aa17■□□□□ 0.31
COL7A1-205ENST00000465238 PRRC2CQ9Y520 2896 aaKnown RBP17■□□□□ 0.31
COL7A1-205ENST00000465238 IQANK1A0A1B0GTG1 560 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 A0A1W2PPV9 198 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 CCNDBP1O95273 360 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 ALDOAP04075 364 aaKnown RBP16.99■□□□□ 0.31
COL7A1-205ENST00000465238 ANXA5P08758 320 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 MSL3P1P0C860 447 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 PSMB5P28074 263 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 GCAP28676 217 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 CMPK1P30085 196 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 HSD17B3P37058 310 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 NAA30Q147X3 362 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-205ENST00000465238 FAM83EQ2M2I3 478 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 FAM20CQ8IXL6 584 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 C19orf47Q8N9M1 422 aaKnown RBP16.99■□□□□ 0.31
COL7A1-205ENST00000465238 SLC38A9Q8NBW4 561 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 OR2A1Q8NGT9 310 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 CAVIN3Q969G5 261 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 KIAA1191Q96A73 305 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 MIB2Q96AX9 1013 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 MTBPQ96DY7 904 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 TCTN2Q96GX1 697 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 EGFL8Q99944 293 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 ATG10Q9H0Y0 220 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 CHST8Q9H2A9 424 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 PPCSQ9HAB8 311 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 CCDC177Q9NQR7 707 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-205ENST00000465238 PSMC3IPQ9P2W1 217 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-205ENST00000465238 OARD1Q9Y530 152 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 USP9XQ93008 2570 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-205ENST00000465238 MED13Q9UHV7 2174 aa16.99■□□□□ 0.31
COL7A1-205ENST00000465238 USP9YO00507 2555 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 SPENQ96T58 3664 aaKnown RBP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 MEN1O00255 615 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 DNAJB5O75953 348 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 SHBGP04278 402 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 RAB40ALP0C0E4 278 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 MAGP20916 626 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 CCND1P24385 295 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 CDKL1Q00532 357 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 SRSF1Q07955 248 aaKnown RBP eCLIP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 NAE1Q13564 534 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 IL10RAQ13651 578 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 NAA25Q14CX7 972 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 PPP1R3AQ16821 1122 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 ATCAYQ86WG3 371 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 GPSM1Q86YR5 675 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 OR2L3Q8NG85 312 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 STAG3L4Q8TBR4 150 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 KCTD4Q8WVF5 259 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 N4BP2L2Q92802 583 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 ZUFSPQ96AP4 578 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 ALKBH8Q96BT7 664 aaKnown RBP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 FBXL8Q96CD0 374 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 NXNL1Q96CM4 212 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 TRIM55Q9BYV6 548 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 PCBD2Q9H0N5 130 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 MRPS30Q9NP92 439 aaKnown RBP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 IGSF5Q9NSI5 407 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 ANKMY1Q9P2S6 941 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 TAC3Q9UHF0 121 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 RNF112Q9ULX5 631 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 PLAAQ9Y263 795 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 KLHL20Q9Y2M5 609 aa16.98■□□□□ 0.31
COL7A1-205ENST00000465238 PCDHGA9Q9Y5G4 932 aaKnown RBP16.98■□□□□ 0.31
COL7A1-205ENST00000465238 CLEC18AA5D8T8 446 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 TARM1B6A8C7 271 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 KLHL2O95198 593 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 S100BP04271 92 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms