RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 FDXRP22570 491 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 MMP11P24347 488 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 HRH2P25021 359 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 CASQ1P31415 396 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 MGAT5Q09328 741 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 MAATS1Q7Z4T9 603 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 SPATA4Q8NEY3 305 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 SMAD5Q99717 465 aaKnown RBP20.24■□□□□ 0.83
HMGB3-205ENST00000455596 PCBD2Q9H0N5 130 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 SOX17Q9H6I2 414 aaPredicted RBP20.24■□□□□ 0.83
HMGB3-205ENST00000455596 TMEM184CQ9NVA4 438 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 CTSFQ9UBX1 484 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 CDC23Q9UJX2 597 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 CDC14AQ9UNH5 594 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 RUVBL1Q9Y265 456 aaKnown RBP20.24■□□□□ 0.83
HMGB3-205ENST00000455596 VSTM2BA6NLU5 285 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 HAT1O14929 419 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 DPM1O60762 260 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 CCND1P24385 295 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 MRPS25P82663 173 aaKnown RBP20.23■□□□□ 0.83
HMGB3-205ENST00000455596 FOXK1P85037 733 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 OCA2Q04671 838 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 CALCOCO2Q13137 446 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 FASTKD3Q14CZ7 662 aaKnown RBP20.23■□□□□ 0.83
HMGB3-205ENST00000455596 HKDC1Q2TB90 917 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 GARNL3Q5VVW2 1013 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 AGTRAPQ6RW13 159 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 MBOAT1Q6ZNC8 495 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 MVB12AQ96EY5 273 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 OLFM1Q99784 485 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 SYNPO2LQ9H987 977 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 SEMA3GQ9NS98 782 aa20.23■□□□□ 0.83
HMGB3-205ENST00000455596 ZNF282Q9UDV7 671 aaPredicted RBP20.23■□□□□ 0.83
HMGB3-205ENST00000455596 H7BY64 318 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 PRPF4O43172 522 aaKnown RBP eCLIP20.22■□□□□ 0.83
HMGB3-205ENST00000455596 KLHL41O60662 606 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 TSPAN12O95859 305 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 FBLP22087 321 aaKnown RBP20.22■□□□□ 0.83
HMGB3-205ENST00000455596 C2orf54Q08AI8 447 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 CBLBQ13191 982 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 RAPSNQ13702 412 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 IGFBP7Q16270 282 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 PHKG1Q16816 387 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 NADK2Q4G0N4 442 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 VWA5B1Q5TIE3 1220 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 SHISA6Q6ZSJ9 500 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 ZBED8Q8IZ13 594 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 C17orf53Q8N3J3 647 aaPredicted RBP20.22■□□□□ 0.83
HMGB3-205ENST00000455596 GALNT16Q8N428 558 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 STT3BQ8TCJ2 826 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 PRAP1Q96NZ9 151 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 ERP44Q9BS26 406 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 TRIM54Q9BYV2 358 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 ATG10Q9H0Y0 220 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 DPH5Q9H2P9 285 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 ATP13A2Q9NQ11 1180 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 MOCS1Q9NZB8 636 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 WHRNQ9P202 907 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 C5AR2Q9P296 337 aa20.22■□□□□ 0.83
HMGB3-205ENST00000455596 PGGT1BP53609 377 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 MLLT10P55197 1068 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 ETF1P62495 437 aaKnown RBP20.21■□□□□ 0.83
HMGB3-205ENST00000455596 AIMP2Q13155 320 aaKnown RBP20.21■□□□□ 0.83
HMGB3-205ENST00000455596 NAE1Q13564 534 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 MYBPC3Q14896 1274 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 RBBP7Q16576 425 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 SYT10Q6XYQ8 523 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 STRA8Q7Z7C7 330 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 SLC26A11Q86WA9 606 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 C17orf64Q86WR6 236 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 PLD3Q8IV08 490 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 ALKBH8Q96BT7 664 aaKnown RBP20.21■□□□□ 0.83
HMGB3-205ENST00000455596 MIEF2Q96C03 454 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 VPS50Q96JG6 964 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 CRB3Q9BUF7 120 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 ARL15Q9NXU5 204 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 NSMCE4AQ9NXX6 385 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 PSAT1Q9Y617 370 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 HS3ST3B1Q9Y662 390 aa20.21■□□□□ 0.83
HMGB3-205ENST00000455596 SCN3AQ9NY46 2000 aa20.2■□□□□ 0.83
HMGB3-205ENST00000455596 SOCS6O14544 535 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 RAD51CO43502 376 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 ANXA5P08758 320 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 ZGLP1P0C6A0 271 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 AP1S2P56377 157 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 SOX8P57073 446 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 RPS15AP62244 130 aaKnown RBP20.2■□□□□ 0.82
HMGB3-205ENST00000455596 KLC1Q07866 573 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 NDUFA9Q16795 377 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 CAPN13Q6MZZ7 669 aaPredicted RBP20.2■□□□□ 0.82
HMGB3-205ENST00000455596 LCTLQ6UWM7 567 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 ZC3HC1Q86WB0 502 aaKnown RBP20.2■□□□□ 0.82
HMGB3-205ENST00000455596 PYROXD1Q8WU10 500 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 MMABQ96EY8 250 aaPredicted RBP20.2■□□□□ 0.82
HMGB3-205ENST00000455596 SGPP1Q9BX95 441 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 DRC3Q9H069 523 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 FBXL4Q9UKA2 621 aa20.2■□□□□ 0.82
HMGB3-205ENST00000455596 TENM4Q6N022 2769 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 IGLV3-12A0A075B6K2 115 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 FAM95CA0A1B0GW59 222 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms