RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NCF1BA6NI72 391 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 NCF1CA8MVU1 366 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 UBXN8O00124 270 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 SLC16A5O15375 505 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 BIRC5O15392 142 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 KIF1CO43896 1103 aaKnown RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 H2AFYO75367 372 aaKnown RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 BPGMP07738 259 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 HIST1H2AGP0C0S8 130 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 TPBGLP0DKB5 382 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 NCF1P14598 390 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 HIST1H2ADP20671 130 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 PDHA2P29803 388 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 BDKRB1P46663 353 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 SEPHS1P49903 392 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 WDR4P57081 412 aaKnown RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 FOXM1Q08050 763 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 KLRB1Q12918 225 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 ERV3-1Q14264 604 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 SBSNQ6UWP8 590 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 UNC5DQ6UXZ4 953 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 ISCA2Q86U28 154 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 NUDCD3Q8IVD9 361 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 DCUN1D3Q8IWE4 304 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 FAM26EQ8N5C1 309 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 LRRC8CQ8TDW0 803 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 RSC1A1Q92681 617 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 HIST1H2AHQ96KK5 128 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 C12orf66Q96MD2 445 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 TGM7Q96PF1 710 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 OR6C1Q96RD1 312 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 HIST1H2AJQ99878 128 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 H2AFJQ9BTM1 129 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 MECRQ9BV79 373 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 WWP1Q9H0M0 922 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 OR52A5Q9H2C5 316 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 ZNF768Q9H5H4 540 aaKnown RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 UTP6Q9NYH9 597 aaKnown RBP11.72□□□□□ -0.53
PTPRF-208ENST00000437607 WWOXQ9NZC7 414 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 IKZF3Q9UKT9 509 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 PSMD13Q9UNM6 376 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 ASF1AQ9Y294 204 aa11.72□□□□□ -0.53
PTPRF-208ENST00000437607 LRBAP50851 2863 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 WDR91A4D1P6 747 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 A8MT66 165 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 ARHGEF33A8MVX0 844 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PSIP1O75475 530 aaKnown RBP11.71□□□□□ -0.53
PTPRF-208ENST00000437607 KIAA0754O94854 1291 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 UBXN7O94888 489 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PDGFAP04085 211 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 FGF5P12034 268 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 RPL10P27635 214 aaKnown RBP11.71□□□□□ -0.53
PTPRF-208ENST00000437607 ALDH3A1P30838 453 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 MDH1P40925 334 aaKnown RBP11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PRKAA2P54646 552 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 GYS2P54840 703 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 MLLT10P55197 1068 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 AP1S2P56377 157 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 GUCY1A3Q02108 690 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 ABRQ12979 859 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 TGFBIQ15582 683 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PDK4Q16654 411 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PPP1R3AQ16821 1122 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 LIPMQ5VYY2 423 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 METRNLQ641Q3 311 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 TCTN3Q6NUS6 607 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 TTC23LQ6PF05 361 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 C6orf15Q6UXA7 325 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-208ENST00000437607 C10orf107Q8IVU9 208 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PTGR2Q8N8N7 351 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-208ENST00000437607 RAB3IL1Q8TBN0 382 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 MAGEC3Q8TD91 643 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 MCOLN3Q8TDD5 553 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 ASB11Q8WXH4 323 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 CAPS2Q9BXY5 557 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PARVBQ9HBI1 364 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 IMP3Q9NV31 184 aaKnown RBP11.71□□□□□ -0.53
PTPRF-208ENST00000437607 ADAMTS6Q9UKP5 1117 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 HEBP2Q9Y5Z4 205 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 NUP210LQ5VU65 1888 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 PCSK5Q92824 1860 aa11.71□□□□□ -0.53
PTPRF-208ENST00000437607 MDC1Q14676 2089 aaKnown RBP11.71□□□□□ -0.54
PTPRF-208ENST00000437607 BLACEA4D250 179 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 G3V2L1 256 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 TOX3O15405 576 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-208ENST00000437607 KDM1AO60341 852 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 IPO13O94829 963 aaKnown RBP11.7□□□□□ -0.54
PTPRF-208ENST00000437607 TIAF1O95411 115 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 MATN4O95460 622 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 GUCA1CO95843 209 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 VIPP01282 170 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 NTRK1P04629 796 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 SERPINE1P05121 402 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 ANXA5P08758 320 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 BGNP21810 368 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 PPP1CAP62136 330 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 GNGT1P63211 74 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 CDKL1Q00532 357 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 KRT33BQ14525 404 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 IL11RAQ14626 422 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms