RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RFX5P48382 616 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 LSM3P62310 102 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 C15orf52Q6ZUT6 534 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 CNOT9Q92600 299 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 SPATA31A3Q5VYP0 1347 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 FAAHO00519 579 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CD81P60033 236 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PFKPQ01813 784 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 COL9A2Q14055 689 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 RAVER1Q8IY67 606 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 UBA3Q8TBC4 463 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PPP1R13LQ8WUF5 828 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 RSC1A1Q92681 617 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TCF25Q9BQ70 676 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 BTBD2Q9BX70 525 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TLE6Q9H808 572 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 USP21Q9UK80 565 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 OAZ3Q9UMX2 235 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MRPS5P82675 430 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 PPP3CAQ08209 521 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CRYZQ08257 329 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 IL10RBQ08334 325 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 EPHA10Q5JZY3 1008 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 HGSNATQ68CP4 663 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 FBXL19Q6PCT2 694 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 EFCAB3Q8N7B9 438 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 LINGO1Q96FE5 620 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CFAP97Q9P2B7 532 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ZNF490Q9ULM2 529 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 RFPL3O75679 317 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PGLSO95336 258 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 HSD17B1P14061 328 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CTXN3Q4LDR2 81 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ZCCHC23Q6ZST2 131 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MON1BQ7L1V2 547 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 LACC1Q8IV20 430 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 LIX1LQ8IVB5 337 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SHKBP1Q8TBC3 707 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ORAI2Q96SN7 254 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 RPF2Q9H7B2 306 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 COQ4Q9Y3A0 265 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ARPC2O15144 300 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SNRNP200O75643 2136 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 SNAP29O95721 258 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 HBE1P02100 147 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SLC35G6P0C7Q6 338 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 RPS14P62263 151 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 OGFRL1Q5TC84 451 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 NIPAL3Q6P499 406 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 EPGNQ6UW88 154 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 OR7G1Q8NGA0 311 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ELMOD3Q96FG2 381 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TMEM39BQ9GZU3 492 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TCAF1Q9Y4C2 921 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 UGT2A1Q9Y4X1 527 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 MROH1Q8NDA8 1641 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 FAM86B1E9PN63 330 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 F10P00742 488 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 FAM86B2P0C5J1 330 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 RAB3AP20336 220 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ARSFP54793 590 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MAD2L1BPQ15013 274 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 SSX2Q16385 188 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 C6orf183Q5T699 404 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MBOAT1Q6ZNC8 495 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 FAM86B1Q8N7N1 296 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ADAMTS19Q8TE59 1207 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ROBO2Q9HCK4 1378 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PRAMEF2O60811 474 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ANXA4P09525 319 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 CKBP12277 381 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CYP2B6P20813 491 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 IDH3AP50213 366 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SLC16A10Q8TF71 515 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PPRC1Q5VV67 1664 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 SLC22A31A6NKX4 558 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 HRGP04196 525 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PRKACAP17612 351 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SUOXP51687 545 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CRB2Q5IJ48 1285 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 VARS2Q5ST30 1063 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 NUDT13Q86X67 352 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 OR10A6Q8NH74 314 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SSX3Q99909 188 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MINDY3Q9H8M7 445 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SLC12A8A0AV02 714 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 EI24O14681 340 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TPT1P13693 172 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 ARF4P18085 180 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 HK1P19367 917 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 RPP30P78346 268 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 SF3A2Q15428 464 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 TAF1AQ15573 450 aaPredicted RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 CHST9Q7L1S5 443 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SPPL2CQ8IUH8 684 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CCDC71LQ8N9Z2 235 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 C7orf43Q8WVR3 580 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TBC1D17Q9HA65 648 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 LUZP4Q9P127 313 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms