RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 VSTM2BA6NLU5 285 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 JRKO75564 520 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 ONECUT2O95948 504 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 GOT2P00505 430 aaKnown RBP12.31□□□□□ -0.44
LINC00339-202ENST00000416769 IGHEP01854 428 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 STSP08842 583 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 MST1P26927 711 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 ELK3P41970 407 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 NSG1P42857 185 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 MAGEA4P43358 317 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 RAB28P51157 221 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 VSX2P58304 361 aaPredicted RBP12.31□□□□□ -0.44
LINC00339-202ENST00000416769 VSNL1P62760 191 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 CRADDP78560 199 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 KLC1Q07866 573 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 HSPA14Q0VDF9 509 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 MFAP5Q13361 173 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 SLMAPQ14BN4 828 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 VWA2Q5GFL6 755 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 TSTD2Q5T7W7 516 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 B3GNTL1Q67FW5 361 aaPredicted RBP12.31□□□□□ -0.44
LINC00339-202ENST00000416769 ZNF449Q6P9G9 518 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 FIGLAQ6QHK4 219 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 PACS1Q6VY07 963 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 AGGF1Q8N302 714 aaeCLIP12.31□□□□□ -0.44
LINC00339-202ENST00000416769 MPP5Q8N3R9 675 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 SIRT6Q8N6T7 355 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 PYROXD1Q8WU10 500 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 ITLN2Q8WWU7 325 aaPredicted RBP12.31□□□□□ -0.44
LINC00339-202ENST00000416769 PSMF1Q92530 271 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 ZNF285Q96NJ3 590 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 SLC26A1Q9H2B4 701 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 WDR54Q9H977 334 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 SAYSD1Q9NPB0 183 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 SAMD15Q9P1V8 674 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 PTGFRNQ9P2B2 879 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 POLG2Q9UHN1 485 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 SH3BGRL2Q9UJC5 107 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 NFS1Q9Y697 457 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 CACNA1CQ13936 2221 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 CPAMD8Q8IZJ3 1885 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 HIVEP1P15822 2718 aa12.31□□□□□ -0.44
LINC00339-202ENST00000416769 AKAP9Q99996 3911 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 A0A0J9YVX5 310 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 PRICKLE3O43900 615 aaPredicted RBP12.3□□□□□ -0.44
LINC00339-202ENST00000416769 USP1O94782 785 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 TTC4O95801 387 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 FTH1P02794 183 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 PGAM1P18669 254 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 CD9P21926 228 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 PMP22Q01453 160 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 ACVR1Q04771 509 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 EEF1A2Q05639 463 aaKnown RBP12.3□□□□□ -0.44
LINC00339-202ENST00000416769 ITIH4Q14624 930 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 TLR1Q15399 786 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 CDSNQ15517 529 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 ANKRD20A4Q4UJ75 823 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 FAAH2Q6GMR7 532 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 CASC4Q6P4E1 433 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 FAM180AQ6UWF9 173 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 ISLR2Q6UXK2 745 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 IGDCC3Q8IVU1 814 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 PALM2Q8IXS6 379 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 ZBED8Q8IZ13 594 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 SLC22A15Q8IZD6 547 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 BRIX1Q8TDN6 353 aaKnown RBP12.3□□□□□ -0.44
LINC00339-202ENST00000416769 DLG3Q92796 817 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 HDAC10Q969S8 669 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 C10orf90Q96M02 699 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 MIPEPQ99797 713 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 SELENOSQ9BQE4 189 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 CRB3Q9BUF7 120 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 EPS8L2Q9H6S3 715 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 TREX1Q9NSU2 369 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.3□□□□□ -0.44
LINC00339-202ENST00000416769 MARCH4Q9P2E8 410 aaPredicted RBP12.3□□□□□ -0.44
LINC00339-202ENST00000416769 COPG2Q9UBF2 871 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 MAD1L1Q9Y6D9 718 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 FAM169AQ9Y6X4 670 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 DCHS2Q6V1P9 2916 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 HEATR5BQ9P2D3 2071 aa12.3□□□□□ -0.44
LINC00339-202ENST00000416769 MED13LQ71F56 2210 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 PCDH17O14917 1159 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 ZNHIT1O43257 154 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 BANF1O75531 89 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 ALBP02768 609 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 GSTA2P09210 222 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 MYBL2P10244 700 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 COX6A1P12074 109 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 NMBRP28336 390 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 SOX11P35716 441 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 FASTKQ14296 549 aaKnown RBP12.29□□□□□ -0.44
LINC00339-202ENST00000416769 SF1Q15637 639 aaKnown RBP12.29□□□□□ -0.44
LINC00339-202ENST00000416769 SPANXN3Q5MJ09 141 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 WASHC2DQ5SRD0 308 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 HP1BP3Q5SSJ5 553 aaPredicted RBP12.29□□□□□ -0.44
LINC00339-202ENST00000416769 NCCRP1Q6ZVX7 275 aaPredicted RBP12.29□□□□□ -0.44
LINC00339-202ENST00000416769 CYS1Q717R9 158 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 CCDC25Q86WR0 208 aa12.29□□□□□ -0.44
LINC00339-202ENST00000416769 ANKMY2Q8IV38 441 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms