RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DUXAA6NLW8 204 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 ATP6V1G2-DDX39BF2Z307 99 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 H3BRB1 525 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 FCER2P06734 321 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CCNOP22674 350 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 BMP8BP34820 402 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PLGLAQ15195 96 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 USP49Q70CQ1 688 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 VASH1Q7L8A9 365 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 BMP8AQ7Z5Y6 402 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 SH3RF1Q7Z6J0 888 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 SEMA6CQ9H3T2 930 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 ASF1BQ9NVP2 202 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 DNM1LO00429 736 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 ANXA8P13928 327 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 C1QTNF8P60827 252 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 HHIPL2Q6UWX4 724 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 SAMD12Q8N8I0 201 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF75AQ96N20 296 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PHOX2BQ99453 314 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CD180Q99467 661 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 NMUR2Q9GZQ4 415 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CNOT11Q9UKZ1 510 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 OVOS2A0A0J9YW53 1432 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 OVOS2Q6IE36 1432 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 KLF10Q13118 480 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 LRP8Q14114 963 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 GK2Q14410 553 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 DPY19L1Q2PZI1 675 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 LRRC38Q5VT99 294 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CLEC6AQ6EIG7 209 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 TMEM214Q6NUQ4 689 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 NPLOC4Q8TAT6 608 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 COQ10BQ9H8M1 238 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 OR2S2Q9NQN1 319 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CLTCQ00610 1675 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 SERPINA7P05543 415 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM124AQ86V42 546 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 MITD1Q8WV92 249 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 HAS2Q92819 552 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 BSCL2Q96G97 398 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 MSRAQ9UJ68 235 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 YARS2Q9Y2Z4 477 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 F8VP50 259 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 TGM7Q96PF1 710 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PCDHGA2Q9Y5H1 932 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 J3QR89 54 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CHRNB2P17787 502 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PPIGQ13427 754 aaKnown RBP eCLIP13.01□□□□□ -0.332e-7■□□□□ 10.9
CCDC88A-204ENST00000413716 KCT2Q8NC54 265 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 DNERQ8NFT8 737 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 VRK1Q99986 396 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CRTAC1Q9NQ79 661 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 SDHAF3Q9NRP4 125 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 ZFP57Q9NU63 452 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PCDHGA5Q9Y5G8 931 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PXDNLA1KZ92 1463 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 INMTO95050 263 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CHRNB1P11230 501 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 GOT1P17174 413 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 HABP2Q14520 560 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 DPYSL2Q16555 572 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MPP7Q5T2T1 576 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ERN2Q76MJ5 926 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 BEST4Q8NFU0 473 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 TFB2MQ9H5Q4 396 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 FN3KRPQ9HA64 309 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 WDR45Q9Y484 360 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 SULT1C2O00338 296 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF821O75541 412 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 ACTL6BO94805 426 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MAOAP21397 527 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 SPAM1P38567 509 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 EXOC3L2Q2M3D2 409 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MARVELD2Q8N4S9 558 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 C2orf73Q8N5S3 287 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 OR10G2Q8NGC3 310 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 OR52E4Q8NGH9 312 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CMKLR1Q99788 373 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 YTHDF1Q9BYJ9 559 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 LRRC19Q9H756 370 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MRPS30Q9NP92 439 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 MYOZ2Q9NPC6 264 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 GRM6O15303 877 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CSDE1O75534 798 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 PRPS2P11908 318 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MYCLP1P12525 358 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 IRF2P14316 349 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 IDSP22304 550 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FANK1Q8TC84 345 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM84BQ96KN1 310 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 TAAR1Q96RJ0 339 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MRPS23Q9Y3D9 190 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 TAS1R3Q7RTX0 852 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ZCCHC10Q8TBK6 192 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 LCN9Q8WX39 176 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 LRRC3Q9BY71 257 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FLRT1Q9NZU1 646 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CLCA3PQ9Y6N3 262 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 C8GP07360 202 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms