RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PARP15Q460N3 678 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 BOLA3Q53S33 107 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 OTUD1Q5VV17 481 aaPredicted RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 ALKBH5Q6P6C2 394 aaKnown RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 SLC30A9Q6PML9 568 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 ZNF474Q6S9Z5 364 aaPredicted RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 H2AFVQ71UI9 128 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 BNIPLQ7Z465 357 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 TMEM200AQ86VY9 491 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 BBS5Q8N3I7 341 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 RYBPQ8N488 228 aaPredicted RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 PCDH20Q8N6Y1 951 aaKnown RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 FAM98AQ8NCA5 519 aaKnown RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 OR2T34Q8NGX1 318 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 NSMCE1Q8WV22 266 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 LMLNQ96KR4 655 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 FCRL5Q96RD9 977 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 ISCUQ9H1K1 167 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 DHX35Q9H5Z1 703 aaKnown RBP6.28□□□□□ -1.4
USP40-202ENST00000409945 SLCO3A1Q9UIG8 710 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 PILRBQ9UKJ0 227 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 DMRT1Q9Y5R6 373 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 PLXND1Q9Y4D7 1925 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 DMDP11532 3685 aa6.28□□□□□ -1.4
USP40-202ENST00000409945 ANTXRLA6NF34 631 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 TMEM191CA6NGB0 347 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ARHGAP42A6NI28 874 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 AKR1B15C9JRZ8 316 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 KPNA3O00505 521 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 MCF2LO15068 1137 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 BCAT2O15382 392 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 GYPCP04921 128 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 CYP2A6P11509 494 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 NFKBIAP25963 317 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SERPINB6P35237 376 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PCK1P35558 622 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PGM1P36871 562 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PTGER3P43115 390 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 STK19P49842 368 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 C21orf59P57076 290 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 VAMP2P63027 116 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 HNRNPDQ14103 355 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 SF3A2Q15428 464 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 CCDC6Q16204 474 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 GXYLT1Q4G148 440 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 RUNDC3AQ59EK9 446 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 CFAP58Q5T655 872 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 C9orf64Q5T6V5 341 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 STPG1Q5TH74 334 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PRAMEF17Q5VTA0 474 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 DHRS13Q6UX07 377 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PRPF39Q86UA1 669 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 MAP7D3Q8IWC1 876 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 STK40Q8N2I9 435 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 DEFB119Q8N690 84 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 CCDC185Q8N715 623 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 RTL3Q8N8U3 475 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 PNLDC1Q8NA58 520 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 KAT2AQ92830 837 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ISG20Q96AZ6 181 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 ARHGEF26Q96DR7 871 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 P2RY11Q96G91 374 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ADAD1Q96M93 576 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 ABHD14AQ9BUJ0 271 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 EFHD1Q9BUP0 239 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 GTPBP2Q9BX10 602 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 NUAK2Q9H093 628 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 UVRAGQ9P2Y5 699 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 IL36AQ9UHA7 158 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ANAPC7Q9UJX3 599 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 FZD10Q9ULW2 581 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 TMEM98Q9Y2Y6 226 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 CKAP5Q14008 2032 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SDK1Q7Z5N4 2213 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 GPR179Q6PRD1 2367 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 EML5Q05BV3 1969 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SLC22A23A1A5C7 686 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 GOLGA6L9A6NEM1 432 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 MID1O15344 667 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 BUB1O43683 1085 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 DFNA5O60443 496 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 NEBLO76041 1014 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 IGSF6O95976 241 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SLPIP03973 132 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SRCP12931 536 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 WT1P19544 449 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 HNRNPH3P31942 346 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 CHRNA3P32297 505 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SERPINH1P50454 418 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 NDST2P52849 883 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 KRT81Q14533 505 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SPA17Q15506 151 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SLC18A3Q16572 532 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 TSTQ16762 297 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 PRICKLE4Q2TBC4 344 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PPP6R3Q5H9R7 873 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 TRNP1Q6NT89 227 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 C22orf39Q6P5X5 142 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ZNF782Q6ZMW2 699 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 TTC30BQ8N4P2 665 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms