RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ISG20Q96AZ6 181 aaKnown RBP12.96□□□□□ -0.34
VPS54-203ENST00000409558 HSH2DQ96JZ2 352 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 FZD4Q9ULV1 537 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 ASF1AQ9Y294 204 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 MYO1DO94832 1006 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 CHRM5P08912 532 aaPredicted RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 PIM1P11309 404 aaPredicted RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 GPR1P46091 355 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 ALDH3B2P48448 385 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 PRIM2P49643 509 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 PFN3P60673 137 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 POLR2LP62875 67 aaKnown RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 ADRM1Q16186 407 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 UGT8Q16880 541 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 BROXQ5VW32 411 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 TMC8Q8IU68 726 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 OR4A15Q8NGL6 344 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 JPH3Q8WXH2 748 aaPredicted RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 TPT1P8Q9HAU6 139 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 TM7SF3Q9NS93 570 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 GMPPBQ9Y5P6 360 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 CKAP5Q14008 2032 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 WASHC1A8K0Z3 465 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 H0Y858 1186 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 ANGPTL1O95841 491 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 KIAA0040Q15053 153 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 DUS1LQ6P1R4 473 aaKnown RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 WASH2PQ6VEQ5 465 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 CYP4Z1Q86W10 505 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 ERI1Q8IV48 349 aaKnown RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 RIMKLAQ8IXN7 391 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 DPP10Q8N608 796 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 NELL1Q92832 810 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 PDLIM5Q96HC4 596 aaKnown RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 SELENONQ9NZV5 590 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 NEUROG3Q9Y4Z2 214 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 BCL10O95999 233 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 KLK1P06870 262 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 CPTPQ5TA50 214 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 NAGSQ8N159 534 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 GIPC3Q8TF64 312 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 VWCEQ96DN2 955 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 PYURFQ96I23 114 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 FOPNLQ96NB1 174 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 PKP4Q99569 1192 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 SH3GL1Q99961 368 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 DUSP26Q9BV47 211 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 ASPSCR1Q9BZE9 553 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 ERVW-1Q9UQF0 538 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 SPTBN5Q9NRC6 3674 aaKnown RBP12.95□□□□□ -0.34
VPS54-203ENST00000409558 THSD7BQ9C0I4 1608 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 WDR87Q6ZQQ6 2873 aa12.95□□□□□ -0.34
VPS54-203ENST00000409558 TRBV23OR9-2A0A075B6M9 112 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 A0A0J9YVX5 310 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TLL1O43897 1013 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 PCDH7O60245 1069 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 AMD1P17707 334 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 MAPK8P45983 427 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 RAD23AP54725 363 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 RPL26P61254 145 aaKnown RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 VBP1P61758 197 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 SLBPQ14493 270 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS54-203ENST00000409558 ADIPOR2Q86V24 386 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 DOK4Q8TEW6 326 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 GTPBP3Q969Y2 492 aaKnown RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 OR4K3Q96R72 315 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 NTMT1Q9BV86 223 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 SLC12A9Q9BXP2 914 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 SERHLQ9NQF3 203 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 RAB23Q9ULC3 237 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 BRWD1Q9NSI6 2320 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 FAM227AF5H4B4 570 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 J3KTA2 159 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TIMP2P16035 220 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 COX20Q5RI15 118 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 C6orf141Q5SZD1 244 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TMEM236Q5W0B7 351 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 LRRC3BQ96PB8 259 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 EMILIN2Q9BXX0 1053 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TRPS1Q9UHF7 1281 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TBC1D3BA6NDS4 549 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 GLOD5A6NK44 160 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 GABRR3A8MPY1 467 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 FAM20BO75063 409 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TULP3O75386 442 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 PCDH8O95206 1070 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 C6orf47O95873 294 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 CATP04040 527 aaKnown RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 CCNA2P20248 432 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 RPS3P23396 243 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS54-203ENST00000409558 CHI3L1P36222 383 aaPredicted RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 CLDN8P56748 225 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 COQ5Q5HYK3 327 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 TNFAIP8L2Q6P589 184 aaPredicted RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 PIK3C3Q8NEB9 887 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 OR8J3Q8NGG0 315 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 MIR1-1HGQ9H1L0 117 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 SPNS1Q9H2V7 528 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 C3orf18Q9UK00 162 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 FEZF1A0PJY2 475 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms