RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 RACK1P63244 317 aaKnown RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 REEP5Q00765 189 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ART3Q13508 389 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 HIST2H2ACQ16777 129 aaPredicted RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 CACHD1Q5VU97 1274 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ICE2Q659A1 982 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 HIST2H2AA3Q6FI13 130 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 DCP2Q8IU60 420 aaKnown RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SFTPA2Q8IWL1 248 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SCUBE1Q8IWY4 988 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 PGAM4Q8N0Y7 254 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 NUDT8Q8WV74 236 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SPDL1Q96EA4 605 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 FCRL1Q96LA6 429 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 APOLD1Q96LR9 279 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 LRRC61Q9BV99 259 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 WDR41Q9HAD4 459 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 PRM3Q9NNZ6 103 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 DMRT3Q9NQL9 472 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SPHK1Q9NYA1 384 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 VPS29Q9UBQ0 182 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 TMED5Q9Y3A6 229 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 TP53BP1Q12888 1972 aaPredicted RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 DNAH14Q0VDD8 3507 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ARHGEF17Q96PE2 2063 aaPredicted RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 IGKV1-8A0A0C4DH67 115 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 PRICKLE3O43900 615 aaPredicted RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 KDM1AO60341 852 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 PDE5AO76074 875 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 CTSEP14091 401 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 JUNDP17535 347 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SDC1P18827 310 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SHMT2P34897 504 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SIGLEC14Q08ET2 396 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 C1orf61Q13536 156 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SF1Q15637 639 aaKnown RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 PRRT3Q5FWE3 981 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 IYDQ6PHW0 289 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ARMCX6Q7L4S7 300 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 VN1R5Q7Z5H4 357 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 TAF8Q7Z7C8 310 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 IQCHQ86VS3 1027 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 AMIGO1Q86WK6 493 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 FAM20CQ8IXL6 584 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 KRT78Q8N1N4 520 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 EFCAB3Q8N7B9 438 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ABHD11Q8NFV4 315 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 OR2A1Q8NGT9 310 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 CLHC1Q8NHS4 586 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 C1orf216Q8TAB5 229 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 VPS33AQ96AX1 596 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 EBPLQ9BY08 206 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 TMEM45AQ9NWC5 275 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SLC7A8Q9UHI5 535 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 BAIAP2L1Q9UHR4 511 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 PCDHB11Q9Y5F2 797 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ABCA7Q8IZY2 2146 aa13.52□□□□□ -0.24
GPNMB-203ENST00000409458 CCDC154A6NI56 674 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 H7BY64 318 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TLR4O00206 839 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 FOXE1O00358 373 aaPredicted RBP13.52□□□□□ -0.25
GPNMB-203ENST00000409458 ANGPT2O15123 496 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 MGRN1O60291 552 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 SORBS2O94875 1100 aaKnown RBP13.52□□□□□ -0.25
GPNMB-203ENST00000409458 ACPPP15309 386 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TACR1P25103 407 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 BLKP51451 505 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 CCR8P51685 355 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TIGD2Q4W5G0 525 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 NOXRED1Q6NXP6 359 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TMIGD1Q6UXZ0 262 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 MAMSTRQ6ZN01 415 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TRIM48Q8IWZ4 208 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 OR4E2Q8NGC2 313 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TSPEARQ8WU66 669 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 LCN9Q8WX39 176 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 UBE2E3Q969T4 207 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 PRAP1Q96NZ9 151 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 AIF1LQ9BQI0 150 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 DENND2DQ9H6A0 471 aaPredicted RBP13.52□□□□□ -0.25
GPNMB-203ENST00000409458 SLC6A20Q9NP91 592 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 NDE1Q9NXR1 346 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 MAP10Q9P2G4 905 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 PACSIN3Q9UKS6 424 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 NDUFAF1Q9Y375 327 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TSC22D4Q9Y3Q8 395 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 PCDHGA7Q9Y5G6 932 aa13.52□□□□□ -0.25
GPNMB-203ENST00000409458 TDRD6O60522 2096 aaKnown RBP13.52□□□□□ -0.25
GPNMB-203ENST00000409458 A0A1W2PP18 115 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 CFLARO15519 480 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 EEDO75530 441 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 CSF2P04141 144 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 CHRM5P08912 532 aaPredicted RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 PRPS2P11908 318 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 NME1P15531 152 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 MAPK1P28482 360 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 UBE2IP63279 158 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 CSNK1G2P78368 415 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 PRDX1Q06830 199 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms