RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NECTIN4Q96NY8 510 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 RMI1Q9H9A7 625 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 RARRES3Q9UL19 164 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 TCRBV21S2A2A0A5A6 115 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 CXCR6O00574 342 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 AIREO43918 545 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 CLPXO76031 633 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 KLK1P06870 262 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 DLDP09622 509 aaKnown RBP7.01□□□□□ -1.29
UPF2-203ENST00000397053 ANXA8P13928 327 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ZNF30P17039 623 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ATF6P18850 670 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ACSL1P33121 698 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 CDH15P55291 814 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 DSTNP60981 165 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 NFKB2Q00653 900 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 SGCAQ16586 387 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 PPM1JQ5JR12 505 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 TMEM198Q66K66 360 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 GPR153Q6NV75 609 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ARSKQ6UWY0 536 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 LAS2Q8IYD9 372 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 FTMTQ8N4E7 242 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 METTL27Q8N6F8 245 aaPredicted RBP7.01□□□□□ -1.29
UPF2-203ENST00000397053 INO80EQ8NBZ0 244 aaPredicted RBP7.01□□□□□ -1.29
UPF2-203ENST00000397053 OR52E4Q8NGH9 312 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ZNF461Q8TAF7 563 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 BRI3BPQ8WY22 251 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 MAP3K3Q99759 626 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 LPIN3Q9BQK8 851 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 TTYH3Q9C0H2 523 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 SP140LQ9H930 580 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ANKRA2Q9H9E1 313 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 PRODH2Q9UF12 536 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 CA14Q9ULX7 337 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 ZFR2Q9UPR6 939 aaKnown RBP7.01□□□□□ -1.29
UPF2-203ENST00000397053 TLR6Q9Y2C9 796 aa7.01□□□□□ -1.29
UPF2-203ENST00000397053 RPL36Q9Y3U8 105 aaKnown RBP7.01□□□□□ -1.29
UPF2-203ENST00000397053 HSFX4A0A1B0GTS1 333 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 HSFX3A0A1B0GWH4 333 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 RBM47A0AV96 593 aaKnown RBP7□□□□□ -1.29
UPF2-203ENST00000397053 EDNRAP25101 427 aa7□□□□□ -1.29
UPF2-203ENST00000397053 CRHR1P34998 444 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PITPNAQ00169 270 aa7□□□□□ -1.29
UPF2-203ENST00000397053 TUBB3Q13509 450 aa7□□□□□ -1.29
UPF2-203ENST00000397053 CHRNA6Q15825 494 aa7□□□□□ -1.29
UPF2-203ENST00000397053 MYLK3Q32MK0 819 aa7□□□□□ -1.29
UPF2-203ENST00000397053 LRIF1Q5T3J3 769 aa7□□□□□ -1.29
UPF2-203ENST00000397053 ABHD17BQ5VST6 288 aa7□□□□□ -1.29
UPF2-203ENST00000397053 LRRC66Q68CR7 880 aa7□□□□□ -1.29
UPF2-203ENST00000397053 TMIGD1Q6UXZ0 262 aa7□□□□□ -1.29
UPF2-203ENST00000397053 TRABD2AQ86V40 505 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SLC44A3Q8N4M1 653 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SLC44A1Q8WWI5 657 aa7□□□□□ -1.29
UPF2-203ENST00000397053 HTRA1Q92743 480 aa7□□□□□ -1.29
UPF2-203ENST00000397053 NECAB3Q96P71 396 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 CYP2S1Q96SQ9 504 aa7□□□□□ -1.29
UPF2-203ENST00000397053 TTYH2Q9BSA4 534 aa7□□□□□ -1.29
UPF2-203ENST00000397053 ZNF471Q9BX82 626 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 FN3KQ9H479 309 aa7□□□□□ -1.29
UPF2-203ENST00000397053 TRPV4Q9HBA0 871 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SMPD3Q9NY59 655 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 ZNF226Q9NYT6 803 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SLC17A7Q9P2U7 560 aa7□□□□□ -1.29
UPF2-203ENST00000397053 COMMD3Q9UBI1 195 aa7□□□□□ -1.29
UPF2-203ENST00000397053 GPR34Q9UPC5 381 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SLC7A11Q9UPY5 501 aa7□□□□□ -1.29
UPF2-203ENST00000397053 TMEM98Q9Y2Y6 226 aa7□□□□□ -1.29
UPF2-203ENST00000397053 COMMD3-BMI1R4GMX3 469 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PRRC2BQ5JSZ5 2229 aaKnown RBP7□□□□□ -1.29
UPF2-203ENST00000397053 FAM149AA5PLN7 773 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SOWAHBA6NEL2 793 aa7□□□□□ -1.29
UPF2-203ENST00000397053 OR5K4A6NMS3 321 aa7□□□□□ -1.29
UPF2-203ENST00000397053 GABRDO14764 452 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PIP5K1BO14986 540 aa7□□□□□ -1.29
UPF2-203ENST00000397053 HCRTR2O43614 444 aa7□□□□□ -1.29
UPF2-203ENST00000397053 CYP11A1P05108 521 aa7□□□□□ -1.29
UPF2-203ENST00000397053 NMBRP28336 390 aa7□□□□□ -1.29
UPF2-203ENST00000397053 OTX2P32243 289 aa7□□□□□ -1.29
UPF2-203ENST00000397053 CHRNA4P43681 627 aa7□□□□□ -1.29
UPF2-203ENST00000397053 FOLH1Q04609 750 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SCARB2Q14108 478 aa7□□□□□ -1.29
UPF2-203ENST00000397053 GANABQ14697 944 aaKnown RBP7□□□□□ -1.29
UPF2-203ENST00000397053 RAET1LQ5VY80 246 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PDE12Q6L8Q7 609 aaKnown RBP7□□□□□ -1.29
UPF2-203ENST00000397053 ARL9Q6T311 187 aa7□□□□□ -1.29
UPF2-203ENST00000397053 C1orf52Q8N6N3 182 aaKnown RBP7□□□□□ -1.29
UPF2-203ENST00000397053 GATAD2BQ8WXI9 593 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SLC7A6OSQ96CW6 309 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 ZNF599Q96NL3 588 aa7□□□□□ -1.29
UPF2-203ENST00000397053 AGXT2Q9BYV1 514 aa7□□□□□ -1.29
UPF2-203ENST00000397053 ACTL8Q9H568 366 aa7□□□□□ -1.29
UPF2-203ENST00000397053 CCSER2Q9H7U1 834 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PRTFDC1Q9NRG1 225 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PPM1HQ9ULR3 514 aa7□□□□□ -1.29
UPF2-203ENST00000397053 C14orf166Q9Y224 244 aaKnown RBP7□□□□□ -1.29
UPF2-203ENST00000397053 PLLPQ9Y342 182 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PRAMEF33A0A0G2JMD5 474 aa7□□□□□ -1.29
UPF2-203ENST00000397053 A0A0U1RQF3 1178 aa7□□□□□ -1.29
UPF2-203ENST00000397053 WTIPA6NIX2 430 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms