RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PCDHGA6Q9Y5G7 932 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 GPC6Q9Y625 555 aaPredicted RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 NPIPB15A6NHN6 443 aaPredicted RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 MAGEB17A8MXT2 336 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 M0R082 166 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 MRPS14O60783 128 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 MYO1DO94832 1006 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 CPSF4O95639 269 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 VIPP01282 170 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 CBSLP0DN79 551 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 ITPKAP23677 461 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 MAPK1P28482 360 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 CBSP35520 551 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SLC6A12P48065 614 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 PPP3CCP48454 512 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 GSSP48637 474 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 HNRNPFP52597 415 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 ACLYP53396 1101 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 ITGA1P56199 1179 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 ZXDBP98169 803 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SLC8B1Q6J4K2 584 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 VRK3Q8IV63 474 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SKA2Q8WVK7 121 aaPredicted RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 IPCEF1Q8WWN9 437 aaPredicted RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SLC38A4Q969I6 547 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 TPD52L3Q96J77 140 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 C7orf34Q96L11 122 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SLC22A12Q96S37 553 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SLC12A9Q9BXP2 914 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 AMBNQ9NP70 447 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 BTBD3Q9Y2F9 522 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 EPN2O95208 641 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 COL6A1P12109 1028 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 PRPS1L1P21108 318 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 SMAD3P84022 425 aaKnown RBP12.3□□□□□ -0.44
SHMT1-205ENST00000395684 PRKCZQ05513 592 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 PLD1Q13393 1074 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 CDH18Q13634 790 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ATP13A5Q4VNC0 1218 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 CDKL4Q5MAI5 379 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 FRG2Q64ET8 278 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 GPR153Q6NV75 609 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 MSANTD1Q6ZTZ1 278 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 CYP2U1Q7Z449 544 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 SYT12Q8IV01 421 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 CBARPQ8N350 705 aaPredicted RBP12.3□□□□□ -0.44
SHMT1-205ENST00000395684 KIAA1958Q8N8K9 716 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 DCAF4L2Q8NA75 395 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 PROX1Q92786 737 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 HRASLS5Q96KN8 279 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 DACH2Q96NX9 599 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 FRG2BQ96QU4 278 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 P2RY13Q9BPV8 354 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ITPAQ9BY32 194 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 KLHL25Q9H0H3 589 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 NMRK2Q9NPI5 230 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ABCB10Q9NRK6 738 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 TMEM184CQ9NVA4 438 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ANKMY1Q9P2S6 941 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 RNF6Q9Y252 685 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 TMEM229AB2RXF0 380 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 NPIPB8E9PQR5 432 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF821O75541 412 aaPredicted RBP12.3□□□□□ -0.44
SHMT1-205ENST00000395684 C9P02748 559 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 PRKAR2AP13861 404 aaKnown RBP12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ELAVL2Q12926 359 aaKnown RBP12.3□□□□□ -0.44
SHMT1-205ENST00000395684 SELENBP1Q13228 472 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 CRTC1Q6UUV9 634 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 NEK10Q6ZWH5 1172 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 FAM124AQ86V42 546 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 LYSMD2Q8IV50 215 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ASB11Q8WXH4 323 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 VOPP1Q96AW1 172 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 KCNC2Q96PR1 638 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 COPS4Q9BT78 406 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ATG10Q9H0Y0 220 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ZDHHC3Q9NYG2 299 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF451Q9Y4E5 1061 aa12.3□□□□□ -0.44
SHMT1-205ENST00000395684 PABPN1LA6NDY0 278 aaKnown RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 AIREO43918 545 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 GREM1O60565 184 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 NTRK1P04629 796 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 LAMP1P11279 417 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ELNP15502 786 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 SLC19A1P41440 591 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CLK1P49759 484 aaKnown RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 KCNJ10P78508 379 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 KCNJ8Q15842 424 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF404Q494X3 552 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 TMEM53Q6P2H8 277 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ERICH5Q6P6B1 374 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 TTC23LQ6PF05 361 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 TSEN54Q7Z6J9 526 aaKnown RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 SAPCD2Q86UD0 394 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ARMC8Q8IUR7 673 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 SYNPOQ8N3V7 929 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 DBF4BQ8NFT6 615 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CSGALNACT1Q8TDX6 532 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 MAL2Q969L2 176 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 COPS8Q99627 209 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms