RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 AIG1Q9NVV5 245 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 HOXB6P17509 224 aaKnown RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CPN2P22792 545 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 EIF2B2P49770 351 aaKnown RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 ABHD18Q0P651 414 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SYT16Q17RD7 645 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CYP27C1Q4G0S4 372 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SLC8B1Q6J4K2 584 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 RTN4RL1Q86UN2 441 aaPredicted RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CACTIN-AS1Q8N1I8 211 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SLC39A11Q8N1S5 342 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 ZNF671Q8TAW3 534 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 UBASH3BQ8TF42 649 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 TOP1MTQ969P6 601 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 PCBD2Q9H0N5 130 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 PCTPQ9UKL6 214 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SCN2BO60939 215 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 MFN2O95140 757 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CTSAP10619 480 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 IL7RP16871 459 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CAPN3P20807 821 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SPINT3P49223 89 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 FOXM1Q08050 763 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 DUOXA1Q1HG43 343 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 PDCD4Q53EL6 469 aaKnown RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SPIN4Q56A73 249 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 TNFAIP8L3Q5GJ75 292 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 OR2T5Q6IEZ7 315 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 LUZP2Q86TE4 346 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 GPR135Q8IZ08 494 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CADM2Q8N3J6 435 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 OR2T29Q8NH02 315 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 FIBINQ8TAL6 211 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CD200R1Q8TD46 325 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SLC38A4Q969I6 547 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 RBM18Q96H35 190 aaKnown RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SLC45A3Q96JT2 553 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 IL4I1Q96RQ9 567 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 BRWD1Q9NSI6 2320 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 HHLA1C9JL84 531 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 PSMD11O00231 422 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 NDUFS4O43181 175 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 C8orf89P0DMQ9 161 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 HOXB2P14652 356 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 EPCAMP16422 314 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CST5P28325 142 aaPredicted RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 ARCN1P48444 511 aaKnown RBP12.81□□□□□ -0.36
NPHP4-203ENST00000378169 NUDT6P53370 316 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 OR4D2P58180 307 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 NADSYN1Q6IA69 706 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 KLHL35Q6PF15 583 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 OR9A1PQ8NGU1 263 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 SLC5A11Q8WWX8 675 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 KXD1Q9BQD3 176 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 CNPPD1Q9BV87 410 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 BTBD3Q9Y2F9 522 aa12.81□□□□□ -0.36
NPHP4-203ENST00000378169 A0A1W2PP55 124 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 DRGXA6NNA5 263 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 HTRA2O43464 458 aaPredicted RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CCNB2O95067 398 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 STXBP1P61764 594 aaKnown RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 LETMD1Q6P1Q0 360 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 BLOC1S3Q6QNY0 202 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CYP4V2Q6ZWL3 525 aaPredicted RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 SPNS2Q8IVW8 549 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 RAB8BQ92930 207 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 COPS4Q9BT78 406 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 OARD1Q9Y530 152 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 TMCC2O75069 709 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 C6orf47O95873 294 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 KLKB1P03952 638 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 BCHEP06276 602 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 GM2AP17900 193 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 FUT4P22083 530 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 FAM189BP81408 668 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CDK6Q00534 326 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 TARDBPQ13148 414 aaKnown RBP eCLIP12.8□□□□□ -0.362e-6■■■■■ 28.6
NPHP4-203ENST00000378169 KCTD11Q693B1 232 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CEACAM20Q6UY09 585 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 GALNT10Q86SR1 603 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CROCCP3Q8IVE0 287 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 OR10G2Q8NGC3 310 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 ENKURQ8TC29 256 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 MRPL48Q96GC5 212 aaKnown RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 KCNC2Q96PR1 638 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 ARNT2Q9HBZ2 717 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CD320Q9NPF0 282 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 TVP23BQ9NYZ1 205 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 PHF24Q9UPV7 400 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 PCDHGB3Q9Y5G1 929 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 CHURC1-FNTBB4DL54 471 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 HOXD8P13378 290 aaPredicted RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 ARSAP15289 507 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 PTX3P26022 381 aaPredicted RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 SEPHS1P49903 392 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 DOC2AQ14183 400 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 LARS2Q15031 903 aaKnown RBP12.8□□□□□ -0.36
NPHP4-203ENST00000378169 PLEKHS1Q5SXH7 462 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 SMARCD3Q6STE5 483 aa12.8□□□□□ -0.36
NPHP4-203ENST00000378169 NPAS3Q8IXF0 933 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms