RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NRSN1Q8IZ57 195 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF555Q8NEP9 628 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 DTNBP1Q96EV8 351 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 BRF2Q9HAW0 419 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 GULP1Q9UBP9 304 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 BTBD3Q9Y2F9 522 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 U3KQV3 271 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 MAGEB17A8MXT2 336 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 LAMP1P11279 417 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 HSD3B1P14060 373 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 EEF1B2P24534 225 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 HSD3B2P26439 372 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 RAE1P78406 368 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 MYO7AQ13402 2215 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 ANKRD26P1Q6NSI1 321 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 ZDHHC21Q8IVQ6 265 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 CLECL1Q8IZS7 167 aa20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 METTL2AQ96IZ6 378 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 FAM120CQ9NX05 1096 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 SAMD4AQ9UPU9 718 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-203ENST00000359902 NUP214P35658 2090 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 HS6ST1O60243 411 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 XYLBO75191 536 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 EPN2O95208 641 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 CYP17A1P05093 508 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 CRHBPP24387 322 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 DCKP27707 260 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 PBLDP30039 288 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 METAP1P53582 386 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 NEDD8Q15843 81 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF658BQ4V348 819 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 RBM48Q5RL73 367 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 GPR107Q5VW38 600 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 GPR155Q7Z3F1 870 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 C12orf40Q86WS4 652 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 ZZZ3Q8IYH5 903 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 PGBD3Q8N328 593 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 CDC26Q8NHZ8 85 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 DOK1Q99704 481 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 VNN3Q9NY84 501 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 TMEFF2Q9UIK5 374 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 KPNA3O00505 521 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 CPSF4O95639 269 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 CPNE6O95741 557 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF682O95780 498 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 IRS1P35568 1242 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 VMACQ2NL98 169 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 TCEAL5Q5H9L2 206 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 HIPK1Q86Z02 1210 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 DCP2Q8IU60 420 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 VN1R2Q8NFZ6 395 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 OR7G3Q8NG95 312 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF420Q8TAQ5 688 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 SP7Q8TDD2 431 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 HDAC2Q92769 488 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 COQ10AQ96MF6 247 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 FOPNLQ96NB1 174 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 RAD9AQ99638 391 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 TUBA1CQ9BQE3 449 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 ADNPQ9H2P0 1102 aa20.13■□□□□ 0.81
CCDC88B-203ENST00000359902 SPINT1O43278 529 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 SH3BGRLO75368 114 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 MYO1DO94832 1006 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 HNRNPA1P09651 372 aaKnown RBP eCLIP20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 ADH5P11766 374 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 IL7RP16871 459 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 LRRC23Q53EV4 343 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 CPZQ66K79 652 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 R3HCC1LQ7Z5L2 792 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 PTOV1Q86YD1 416 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 C1orf52Q8N6N3 182 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 CHDHQ8NE62 594 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 DTD2Q96FN9 168 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 ATXN10Q9UBB4 475 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 C3orf18Q9UK00 162 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 COQ6Q9Y2Z9 468 aa20.12■□□□□ 0.81
CCDC88B-203ENST00000359902 GABRR3A8MPY1 467 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 PSMD11O00231 422 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 C1orf105O95561 183 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 SOD1P00441 154 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 JUNBP17275 347 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 MAPK9P45984 424 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 MESP2Q0VG99 397 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 C6orf141Q5SZD1 244 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 RBM23Q86U06 439 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 ARL10Q8N8L6 244 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 HUS1BQ8NHY5 278 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 CHTF18Q8WVB6 975 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 GAB3Q8WWW8 586 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 NEIL2Q969S2 332 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 EPHX3Q9H6B9 360 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 IL1RAPQ9NPH3 570 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 LOC100130705A0A1B0GUX0 176 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 H3BM21 787 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 SCAMP2O15127 329 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 ATE1O95260 518 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 EFNA1P20827 205 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 ST8SIA6P61647 398 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 E2F2Q14209 437 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 MEP1AQ16819 746 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms