RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 ARL11Q969Q4 196 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 RGMAQ96B86 450 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 C10orf71Q711Q0 1435 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 ISM1B1AKI9 464 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 H7C417 338 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 SCAMP3O14828 347 aaKnown RBP12.99□□□□□ -0.33
COL6A3-202ENST00000347401 FLRT2O43155 660 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 PROM1O43490 865 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 SCN2BO60939 215 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 RGS6P49758 472 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 PPP5CP53041 499 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 DPYSL2Q16555 572 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 GPAT4Q86UL3 456 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 CARM1Q86X55 608 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 POC1BQ8TC44 478 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 FN3KQ9H479 309 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 TMEM14AQ9Y6G1 99 aa12.99□□□□□ -0.33
COL6A3-202ENST00000347401 ITGB1P05556 798 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 GSTM2P28161 218 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 PTGIRP43119 386 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 Q8N402 240 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 METTL21AQ8WXB1 218 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 POPDC3Q9HBV1 291 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ACSL5Q9ULC5 683 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 MROH1Q8NDA8 1641 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 TRIP12Q14669 1992 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-202ENST00000347401 TBC1D3BA6NDS4 549 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 NAP1L6A6NFF2 107 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 RFPL2O75678 378 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 BNIP3Q12983 259 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 SCARB2Q14108 478 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ZSWIM9Q86XI8 627 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 PCDHB18PQ96TA0 734 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 IL25Q9H293 177 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 KIAA1217Q5T5P2 1943 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ADH1AP07327 375 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 MSX2P35548 267 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-202ENST00000347401 WSCD1Q658N2 575 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 PARP8Q8N3A8 854 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 OR51D1Q8NGF3 324 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 CYP2W1Q8TAV3 490 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 PAHP00439 452 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ZNF630Q2M218 657 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-202ENST00000347401 C12orf40Q86WS4 652 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 LGI4Q8N135 537 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 FTMTQ8N4E7 242 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ARL14Q8N4G2 192 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ADARB2Q9NS39 739 aaKnown RBP12.98□□□□□ -0.33
COL6A3-202ENST00000347401 TEX51A0A1B0GUA7 166 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 B3GALT2O43825 422 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ZNF155Q12901 538 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-202ENST00000347401 DUOXA1Q1HG43 343 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 PRRG4Q9BZD6 226 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 VPS29Q9UBQ0 182 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 AIPO00170 330 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 CLIC1O00299 241 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 CDKN2CP42773 168 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ZNF157P51786 506 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-202ENST00000347401 TAS2R31P59538 309 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 GBE1Q04446 702 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 SLC15A3Q8IY34 581 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 HSPBAP1Q96EW2 488 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 ASPNQ9BXN1 380 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 RIMKLBQ9ULI2 386 aa12.98□□□□□ -0.33
COL6A3-202ENST00000347401 PIP5K1BO14986 540 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 NELFEP18615 380 aaKnown RBP12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CRYBB1P53674 252 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-202ENST00000347401 UBAP2Q5T6F2 1119 aaKnown RBP12.97□□□□□ -0.33
COL6A3-202ENST00000347401 AADACL2Q6P093 401 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CHPT1Q8WUD6 406 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CFAP97Q9P2B7 532 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 ADRB2P07550 413 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 RPS3P23396 243 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL6A3-202ENST00000347401 HCAR3P49019 387 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CLCA4Q14CN2 919 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 BTBD16Q32M84 506 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 ISLR2Q6UXK2 745 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 ZNF627Q7L945 461 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 NUDT13Q86X67 352 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 PPTC7Q8NI37 304 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 ELP5Q8TE02 316 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 SIX4Q9UIU6 781 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 STMND1H3BQB6 276 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 TBL1XO60907 577 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CILPO75339 1184 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CRYZL1O95825 349 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 GLP1RP43220 463 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 RAB5CP51148 216 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 MRPS6P82932 125 aaKnown RBP12.97□□□□□ -0.33
COL6A3-202ENST00000347401 TMEM53Q6P2H8 277 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 GRIN3AQ8TCU5 1115 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 GPATCH2Q9NW75 528 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 PCDHGA2Q9Y5H1 932 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 XRN1Q8IZH2 1706 aaKnown RBP12.97□□□□□ -0.33
COL6A3-202ENST00000347401 INSIG1O15503 277 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 FFAR2O15552 330 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 IRAK2O43187 625 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 MATN4O95460 622 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 CAPN3P20807 821 aa12.97□□□□□ -0.33
COL6A3-202ENST00000347401 VAMP1P23763 118 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms