RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 TLDC1Q6P9B6 456 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 INTS5Q6P9B9 1019 aaKnown RBP6.03□□□□□ -1.44
VCAN-203ENST00000343200 ZDHHC21Q8IVQ6 265 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 DPYSL5Q9BPU6 564 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 ZNF286AQ9HBT8 521 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 THG1LQ9NWX6 298 aaKnown RBP6.03□□□□□ -1.44
VCAN-203ENST00000343200 PPM1HQ9ULR3 514 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 PIN4Q9Y237 131 aaKnown RBP6.03□□□□□ -1.44
VCAN-203ENST00000343200 PCDHGA6Q9Y5G7 932 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 MYPNQ86TC9 1320 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 STK17BO94768 372 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 NR4A2P43354 598 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 CDNFQ49AH0 187 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 SLC9B1Q4ZJI4 515 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 SWSAP1Q6NVH7 229 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 CARM1Q86X55 608 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 ZNF563Q8TA94 476 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 NPRL2Q8WTW4 380 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 MITD1Q8WV92 249 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 DCAKDQ8WVC6 231 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 SH2D3AQ9BRG2 576 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 CTPS2Q9NRF8 586 aa6.03□□□□□ -1.44
VCAN-203ENST00000343200 XRN1Q8IZH2 1706 aaKnown RBP6.03□□□□□ -1.44
VCAN-203ENST00000343200 DEPDC5O75140 1603 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 TEX13DA0A0J9YY54 714 aaPredicted RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 C2orf78A6NCI8 922 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 DUSP4Q13115 394 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 EPHA7Q15375 998 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 SF1Q15637 639 aaKnown RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 ANKRD22Q5VYY1 191 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 NEPROQ6NW34 567 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 SLC25A36Q96CQ1 311 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 TMEM80Q96HE8 168 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ZNF75AQ96N20 296 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 TUT1Q9H6E5 874 aaKnown RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 FN3KRPQ9HA64 309 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 C14orf119Q9NWQ9 140 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 SH3BGRL2Q9UJC5 107 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 USP20Q9Y2K6 914 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 IRF6O14896 467 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ARPC2O15144 300 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 HLA-HP01893 362 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 COL6A1P12109 1028 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 IFNGR1P15260 489 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 CDH12P55289 794 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ST3GAL4Q11206 333 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 TBX2Q13207 712 aaPredicted RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 ARFRP1Q13795 201 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 UPP1Q16831 310 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 IFI44LQ53G44 452 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 PAN3Q58A45 887 aaKnown RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 GAREM2Q75VX8 874 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 LIX1Q8N485 282 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 OR10T2Q8NGX3 314 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 SNAPC3Q92966 411 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 FERD3LQ96RJ6 166 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 DUSP16Q9BY84 665 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ADAM19Q9H013 955 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 POLR2J3Q9H1A7 115 aaKnown RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 IL26Q9NPH9 171 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 NKX1-2Q9UD57 310 aaPredicted RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 PCDHB12Q9Y5F1 795 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 FAM205AQ6ZU69 1335 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 TCP10L2B9ZVM9 353 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ADAMTS3O15072 1205 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 PRKYO43930 277 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 PIP5K1CO60331 668 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 CALCRP30988 508 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 RELAQ04206 551 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ZNF33BQ06732 778 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 ADIGQ0VDE8 80 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 FAM174BQ3ZCQ3 159 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 GSG1LQ6UXU4 331 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 SLC36A4Q6YBV0 504 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 GPR156Q8NFN8 814 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 SLC5A5Q92911 643 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 COL21A1Q96P44 957 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 HIPK2Q9H2X6 1198 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 DPEP2Q9H4A9 486 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 RHOJQ9H4E5 214 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 GREM2Q9H772 168 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 COL20A1Q9P218 1284 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 POLHQ9Y253 713 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 FAM96BQ9Y3D0 163 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 PLXNA1Q9UIW2 1896 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 NLRP1Q9C000 1473 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 KRBA1A5PL33 1030 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 E7EQ34 232 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 GOSR2O14653 212 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 MT-ND5P03915 603 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 CYP2A6P11509 494 aaPredicted RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 USP41Q3LFD5 358 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 CHRFAM7AQ494W8 412 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 UBAP2Q5T6F2 1119 aaKnown RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 SLC22A25Q6T423 547 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 RALGPS2Q86X27 583 aaPredicted RBP6.02□□□□□ -1.45
VCAN-203ENST00000343200 LZTR1Q8N653 840 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.02□□□□□ -1.45
VCAN-203ENST00000343200 LRRC57Q8N9N7 239 aa6.02□□□□□ -1.45
VCAN-203ENST00000343200 TMEM185AQ8NFB2 350 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms